Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1463 ATGAAAGAAAAGATGATGGACCCCACAGAAGGGCTATCTTGGTTCCGTGTTCTTGGTGTTCAACATCAGCAGGGTTTTGTTGCTGAGGTTTTAAGCAGCTTTCTTGATATAAATTCTGAAGCATATGGGAGTTGGTCCTATTTTGTTCGCAAATTCTCAGATGTTATTGAAGTCACAAACCCATCAAAGCTTTTTATACACTCGTCAATGAATTCAGGATCCTTGATTTCCTTTGCTTCTTCAAACTCTGCATCATCAAGAGAAGATCATAGAGTGGCTAGTACCAGAACCAGGCATTCTCATAATTCAAGGCCTTCGTTTTTGATTCGGATGGCTATGAGAATATCAAGAGCAAGATGGTTCACTTTCTTAAGAAGAGTTTTCCATTACCAAAATGGATCAAGGTCTGATCTGGGGTCCAATCCTTTCAATTCTAGCACTTGGATGACATTAGAGTTGATTGCTCTGATGGTTCAGATAAGCCTCACAACCTTGGTTTTGGCTATTTCTAAGAAGGAGAGACCTGTTTTGCCTATGAGGATTTGGATTTCTTGTTATGATATTGGCTGTCTGCTAAATCTTCTGCTGCTTTATGGCCGTTATCGTCAGCTTTATTTGCCTCATGGAGATGCTCTTAGCCTCTCTGATATGGAACAACAGAGAGGCAATGAAGAAACGAGGTGTTCACATTTGATGAACAAATGCCGGACTTCGCTGGAGCTTTTCTTCGCCATATGGTTTGTGATGGGAAATGTTTGGGTTTTTGACTCACGTTTTGGGTCATTCCAAAGAGCTCCAAAACTGCACGTTCTCTGCATCTCCTTGCTTGCTTGGAATGCCATAACCTACTCTTTCCCTTTCCTTCTCTTCCTCCTGCTCTGCTGCTGTGTGCCTCTGATCAGCAGCCTCCTCGGTTACAACATGAACATGGCATCTTCTGATAAGGGAGCTTCTGATGATCAAATCTCTCAGCTTCCAAGTTGGAGATACAAACAAGTTCATCATAACAAGTTGGACAATAATGGCCATGATTCTGCAGCCAGTGAAGGGCTGATCAATGAAGATCCTGAATGTTGCATTTGCTTAACCAAATACAAAGACAGAGAAGAAGTGAGGCAATTGCCATGTTCTCATATGTTTCACCAAAAATGTGTGGATCAATGGCTGAGAATCATATCTTGTTGTCCTCTATGTAAACAAGGATTACAGAGATAG 1215 0.4156 MKEKMMDPTEGLSWFRVLGVQHQQGFVAEVLSSFLDINSEAYGSWSYFVRKFSDVIEVTNPSKLFIHSSMNSGSLISFASSNSASSREDHRVASTRTRHSHNSRPSFLIRMAMRISRARWFTFLRRVFHYQNGSRSDLGSNPFNSSTWMTLELIALMVQISLTTLVLAISKKERPVLPMRIWISCYDIGCLLNLLLLYGRYRQLYLPHGDALSLSDMEQQRGNEETRCSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFQRAPKLHVLCISLLAWNAITYSFPFLLFLLLCCCVPLISSLLGYNMNMASSDKGASDDQISQLPSWRYKQVHHNKLDNNGHDSAASEGLINEDPECCICLTKYKDREEVRQLPCSHMFHQKCVDQWLRIISCCPLCKQGLQR 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1463 404 SMART ring_2 358 398 IPR001841 -
Lele28g1463 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 403 IPR013083 -
Lele28g1463 404 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 73 402 - -
Lele28g1463 404 Pfam Ring finger domain 357 399 IPR001841 -
Lele28g1463 404 ProSiteProfiles Zinc finger RING-type profile. 358 399 IPR001841 -
Lele28g1463 404 CDD RING-H2_RNF111_like 356 399 - -
Lele28g1463 404 SUPERFAMILY RING/U-box 348 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1463 Lele-ChrLele28 10748080 10752322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1463 82 402 C3H Transcription Factor Family AT4G26580 67.173 1.88e-150 427