Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1427 ATGGATCCTGGTCGCTATGGGCTACATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTCATGGTGCGGCTCATGAGCCAAATTATCGGGTTGGTGGTTCATACGATGAAAGAAGTTTTATTGATGAAAGGTACTCAAGGGATAATATATACCAGAGAGGTGCCTTCCACCGTGATGCTTTGGATAGGGAGGCATATCCTCCATCAGGACCAGCTGTTGGCCATTGGAGTGAATCCAAACGGAGAGGTTATGATGAAGACTATTTGCTTGACAAGGAATATAGACTTCTTCAAAGGCCTTATTATGATTCATATCATCATATTGATGCTTTCAGAGATAGGGAGGCTGACATGTATCCAGAACTTGAAAAGTTTCAAGATGGCTTTGCCAACATGGAAAACTATGATGATCGAGGATATGATAAACTTGGTAGGTTTGGGGGATACGATCGTGATGACTATGCATATGATGATTATGGCTATAGGTCTCATGTATCCCATCATTATAGGGAGGATAGCCATGAGAGGGATGTTGATCATGGTCGTCACAGTCATGATTCTGATTATGGGAAAGGTAGAAGAGATAGCAATTGGAGGCAACATGAATCTCGTGATCGGGAACATGATAGAAGATATCCTAGTAGGGAAAGAGATTTGAGTCCACGTAGGAGGCATGAGCGTTCTCGATCCCGCACTCAGTCTCAATCTCGATCTCGATCCCACTCTCATTCTCATTCACGCTCTCGTTCACAATCTCATGGATATGATGATCGTCCAAGATCAAGGTCCCCACGAGGTCAAAGTCATGGTCGAAGTTATCGAGAAGACAGCTATGCTGATAGTCGATATGAGAGAAGTGAAAAACGAAGGGATCGTGAAGAGAAGCGGCGTGGGCATTATTCAGTGGCTCCATCTGCCACTGTTGTTGTAAAAGGTCTCTCACAAAATGCCAATGAAGAAGATCTATACCAGATTCTTGCGGAATGGGGGCCACTTCGGCATGTTCGAGTTATAAAGGAGCGAAATTCAGGCATTTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACGAGCAATGATGGACAAACATGAAGATGATGGTCTTGTTGTGGGTGGTAGAAGGCTTTTCTTTGAATACAGTAGTAAGCCAACTGGAGGTCCAGGTGGACCTTTTGGTCAAGAGGGATCTATGAAATCAGGTCATAATCATAAAGGCATTACAGTACCGTCTGATTGGATGTGCACCATATGCGGTTACATCAATTTTGCACGGCGAACATCCTGCTATCAGTGTAATGAACCACGGAGTGAGGATGCTCCTGCAGCAGATATTACATTGTCAAATCCAACAGCCTTAGCAAAGAAAGGATTAGAGGCAGGTCCAACTCATGTATTGGTTGTTCGTGGATTGGATGAAAATGCTGATGATGAAGTGCTTCGCTATGAGTTCTCCAAACATGCTCCTATTAAAGATCTTCGTCTTGTGAGAGACAAGTTTACTCATGTCTCCAGGGGATTTGCTTTTGTACATTTCTATTCGGTGGAGGATGCCACCAAGGCTCTTGAAGCAACAAATGGAACAACTCTTGAGAAGAATGGACAGATTCTAAGAGTAGCATATGCAAAAAGTATCCTGGGTCCTGGATCAGGAACATCAGGTCCCTCCCAGTCAAGTAGTTTAGCAGCTGCTGCTATTGAGGCTGCGACATTTTCTCAACAGTATGATTCTGTTGGATGGGCTCCTAAAGAATACAATTCAGATAAACAATCTGCTGGTCAACAGCAAATTGGTGCAGCTCAGACTGATGCATTGGCTCCACAAACAGGCTTTGTTTGGGATGAGGCATCTGGTTATTACTACGATGCTGCTTCAGGGTTTTACTATGATGGGAATACTGGTCTTTACTATGATGGTAATAAGGGGATTTGGTATTCTTATGATCACAATACTCAGCAATATACCCCTTGCACTGATCAAACTGAGAATAAAGCTCCTAGTAATCAATCTGAACCTTCCAAGGTGTCTGACAGTTCCAGCAGTAAAAAAGTGGTTATTTCTGCCCCTGCTACTACCGTTACATCTGCTGAGAAGCCAGCTTCTTTGGCAGATGCAGTCCAGGCTGCCGCAACTGCTGCCATAGCTGCAGAGAAGAAGGAAAAAGAAAAATTGAAGGAGATAAAGCTTGCTTCCAAAAGCAGTATTCTGGCTAACAAAAAGAAAATGAATAATGTGTTGACAATGTGGAAGCAGCGGAGCCATGAGGGTCAAGCTACTCCTGTAGCTCTGGAAGACAATCACCAATCCATATCCATTGATGATAGGTCTTCTGGATATCCCACAAAGAACAAGTTCAAAAATGAGACTACAGATACAAGGGAGAATACTGTGTCCACTTCAGGGATTCCCGTGGCTCCTGCTTCTCAGGCCATTGCTTCTGATTCTCAGGTCCAGCCACGGCCTGTTGGTAATAGCCTTGGAGGCACTCTGAGGGGGGTTATAAGAGGCTCTGGAAGAGGGATCATTAAATCTGATAGTTCTTACTCAGGACCTTCAGCTTCAGCCTCTGCATGTGCATCAGGCGCATCTACATCAAATGTAGATGCTCCAACAGTTGCAACTCCCTTTAGAACAGATGTTTCCGCACTGGGTGCATATGCCACACCTGTCTCTAGTGGAAGTGGCCGAAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAGCCCCCAAGGAACAACCTCAAACTACCTACAGGGATCGTGCAGCTGAGAGGAGAAGTCTGTATGGTTCATCATTGTCAGTTGGGGATGATTTGGCTGAGCTGGAATCTGGGGCAAATCGAGATTTTGCATCGAGGAAGGGTGATCCAATGCCTTTCCCTCCCGGGGTTGGTGGGGGACGTGTGGTTGGAGATGCCGACCTTGATACCTATGAGGTGATTACAGCTGACAAAGCAATTGATGAAAACAATGTAGGCAATCGGATGCTCCGCAACATGGGATGGCAAGAAGGCTTGGGTCTAGGTAAGGATGGAACTGGAATGACAGAGCCTGTCCAGGCACAAAGCACAGAAAGTAGAGCAGGACTTGGAAGTCAGCAGAAAAAGTTGGATCCTAGCCTTGAGGTTCAGGCAGGAGACAGTTATAAGATGCTCATTCACAAGAAAGCACTTGCCAGATTTTGGGAAATGTCATAG 3204 0.4507 MDPGRYGLHQGWDNNSALEGHGAAHEPNYRVGGSYDERSFIDERYSRDNIYQRGAFHRDALDREAYPPSGPAVGHWSESKRRGYDEDYLLDKEYRLLQRPYYDSYHHIDAFRDREADMYPELEKFQDGFANMENYDDRGYDKLGRFGGYDRDDYAYDDYGYRSHVSHHYREDSHERDVDHGRHSHDSDYGKGRRDSNWRQHESRDREHDRRYPSRERDLSPRRRHERSRSRTQSQSRSRSHSHSHSRSRSQSHGYDDRPRSRSPRGQSHGRSYREDSYADSRYERSEKRRDREEKRRGHYSVAPSATVVVKGLSQNANEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAARAMMDKHEDDGLVVGGRRLFFEYSSKPTGGPGGPFGQEGSMKSGHNHKGITVPSDWMCTICGYINFARRTSCYQCNEPRSEDAPAADITLSNPTALAKKGLEAGPTHVLVVRGLDENADDEVLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGTSGPSQSSSLAAAAIEAATFSQQYDSVGWAPKEYNSDKQSAGQQQIGAAQTDALAPQTGFVWDEASGYYYDAASGFYYDGNTGLYYDGNKGIWYSYDHNTQQYTPCTDQTENKAPSNQSEPSKVSDSSSSKKVVISAPATTVTSAEKPASLADAVQAAATAAIAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATPVALEDNHQSISIDDRSSGYPTKNKFKNETTDTRENTVSTSGIPVAPASQAIASDSQVQPRPVGNSLGGTLRGVIRGSGRGIIKSDSSYSGPSASASACASGASTSNVDAPTVATPFRTDVSALGAYATPVSSGSGRRRFSEMPHSASAPKEQPQTTYRDRAAERRSLYGSSLSVGDDLAELESGANRDFASRKGDPMPFPPGVGGGRVVGDADLDTYEVITADKAIDENNVGNRMLRNMGWQEGLGLGKDGTGMTEPVQAQSTESRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFWEMS 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1427 1067 CDD OCRE_SUA_like 609 660 IPR035623 -
Lele28g1427 1067 ProSiteProfiles G-patch domain profile. 991 1037 IPR000467 GO:0003676
Lele28g1427 1067 PANTHER RNA-BINDING PROTEIN 204 1063 - -
Lele28g1427 1067 MobiDBLite consensus disorder prediction 170 300 - -
Lele28g1427 1067 Gene3D - 412 442 - -
Lele28g1427 1067 MobiDBLite consensus disorder prediction 226 248 - -
Lele28g1427 1067 SUPERFAMILY RNA-binding domain, RBD 304 435 IPR035979 GO:0003676
Lele28g1427 1067 Pfam OCRE domain 611 659 IPR041591 -
Lele28g1427 1067 Gene3D - 454 600 IPR012677 -
Lele28g1427 1067 Gene3D - 271 411 IPR012677 -
Lele28g1427 1067 SMART zf_4 414 438 IPR001876 -
Lele28g1427 1067 MobiDBLite consensus disorder prediction 170 225 - -
Lele28g1427 1067 ProSitePatterns Zinc finger RanBP2-type signature. 416 435 IPR001876 -
Lele28g1427 1067 SMART G-patch_5 989 1035 IPR000467 GO:0003676
Lele28g1427 1067 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 467 547 IPR000504 GO:0003723
Lele28g1427 1067 MobiDBLite consensus disorder prediction 795 826 - -
Lele28g1427 1067 MobiDBLite consensus disorder prediction 845 873 - -
Lele28g1427 1067 CDD RRM1_RRM2_RBM5_like 304 384 - -
Lele28g1427 1067 MobiDBLite consensus disorder prediction 1010 1039 - -
Lele28g1427 1067 MobiDBLite consensus disorder prediction 890 922 - -
Lele28g1427 1067 MobiDBLite consensus disorder prediction 774 873 - -
Lele28g1427 1067 MobiDBLite consensus disorder prediction 249 300 - -
Lele28g1427 1067 MobiDBLite consensus disorder prediction 1018 1039 - -
Lele28g1427 1067 MobiDBLite consensus disorder prediction 658 685 - -
Lele28g1427 1067 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 386 IPR000504 GO:0003723
Lele28g1427 1067 Pfam G-patch domain 992 1033 IPR000467 GO:0003676
Lele28g1427 1067 ProSiteProfiles Zinc finger RanBP2 type profile. 412 441 IPR001876 -
Lele28g1427 1067 CDD RRM1_RRM2_RBM5_like 465 545 - -
Lele28g1427 1067 SUPERFAMILY RNA-binding domain, RBD 465 555 IPR035979 GO:0003676
Lele28g1427 1067 MobiDBLite consensus disorder prediction 774 788 - -
Lele28g1427 1067 SMART rrm1_1 468 543 IPR000504 GO:0003723
Lele28g1427 1067 SMART rrm1_1 307 382 IPR000504 GO:0003723
Lele28g1427 1067 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 366 IPR000504 GO:0003723
Lele28g1427 1067 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 469 535 IPR000504 GO:0003723
Lele28g1427 1067 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1427 Lele-ChrLele28 10325465 10334049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1427 970 1036 C2H2 Transcription Factor Family AT5G26610 43.284 8.66e-10 59.7