Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1424 ATGCTATTGAGAAAAATGTGGGAATCGGTATCGAATCGTTCGAGTTCGGGTTCAAATTCCAACTCGCCGGAACGCTTTCGTTGCGTGGATTCGCCTCTGGGTGTGTTCGAGCAATTTCCTGCCGATATAGTGATCCAAATCCTGAGGCTTCTGGATCCCAAAGAAGCTGCGAAATTGAGTCTTGTGTGCAAAGCATGGAGATCGCTGGCCTCCGATAACCGGCTGTGGATTTATTTCCTTCAGAATTACCAATTGGAGCCGTGGGAGACCATTTTTTTCGGCGAGACCAATTTGAGTTCCGGTCATCCTCTTCCAACCTTAGTCAGTCAGATGCATCAGTTATCTTTTAAGCGTATATATGGCCTACGAGAACAAGTTCCTGGTGCTGTTATCATCGATGGTGGTTCTGGCTATTGCAAGTATGGTTGGAGCAAATATGACCGCCCATCAGGGCGATCGGCGACCTTTTTGGAATTCGGTAACCTTGAGACTCCAATGTACACTAGACTTAGACATTTTTTTGCAACCATTTATAGCAGGATGCAGATTAAACCATGTACTCAACCAGTCATTGTTTCTATTCCAATATGCCATTATGACGATACCGAAGCTGCCAAAGCATCAAGGCGGCAGCTTAAGGAGGCAATATGTGCTGCCCTCTTTGACATGAATGTTCCTGCTATTTGTGCTGTCAACCAGGCTACTTTGGCTCTGTATGCTGCAAAACAAACTTCTGGAATAGCTGTTAACGTTGGTTTTCAGGTCACATCTATTGTTCCAATTCTGAATGGTAAAGTTATGCGCAAGGTGGGTGTGGAAGTTGTGGGACTAGGAGCAATCAAACTTACAGGATTCCTTAGGGAGCTGATGCAACAGAACAACATGAATTTTGAATCTTCGTACACTGTTCGCACACTAAAAGAGAAGCTATGCTATGCTGCTATTGATTATGAAGCTGAACTATCAAAAGATACACAAGCATCATTTGAAGCAGCAGGAGAAGGATGGTTTACACTTTCAAAAGAGCGGTTTCAAACAGGAGAGATCTTGTTCCAGCCTCGTCTTGCTGGATTGCAAGCAATGGGTTTGCACCAGGCTGTAGCCCTTTGTATGGACCATTGCCATTCTGCAGAATTAGCAGGTGACCCTGATTGGTTTAAGACTGTGGTTTTATCTGGGGGAACTGCATGTTTACCAGGTCTGGCAGAAAGGTTAGATAAGGAACTCCGTGAGCTATTACCTCCCCAGTTGTCCAGGGGAATCAAAGTCATACCTCCTCCATATGGTGCTGATACTGCATGGTTTGGAGCAAGGACTATTGGCAATTTGAGTACCTTTCCGGGTCCGTGGTGTATAAAGAAGAAGCACTTCCACAAGTCTCGACTCAATCTCATATGGTGA 1401 0.4497 MLLRKMWESVSNRSSSGSNSNSPERFRCVDSPLGVFEQFPADIVIQILRLLDPKEAAKLSLVCKAWRSLASDNRLWIYFLQNYQLEPWETIFFGETNLSSGHPLPTLVSQMHQLSFKRIYGLREQVPGAVIIDGGSGYCKYGWSKYDRPSGRSATFLEFGNLETPMYTRLRHFFATIYSRMQIKPCTQPVIVSIPICHYDDTEAAKASRRQLKEAICAALFDMNVPAICAVNQATLALYAAKQTSGIAVNVGFQVTSIVPILNGKVMRKVGVEVVGLGAIKLTGFLRELMQQNNMNFESSYTVRTLKEKLCYAAIDYEAELSKDTQASFEAAGEGWFTLSKERFQTGEILFQPRLAGLQAMGLHQAVALCMDHCHSAELAGDPDWFKTVVLSGGTACLPGLAERLDKELRELLPPQLSRGIKVIPPPYGADTAWFGARTIGNLSTFPGPWCIKKKHFHKSRLNLIW 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1424 466 PANTHER ACTIN 171 458 IPR004000 -
Lele28g1424 466 Pfam Actin 202 454 IPR004000 -
Lele28g1424 466 Gene3D - 31 102 - -
Lele28g1424 466 SMART actin_3 127 457 IPR004000 -
Lele28g1424 466 Gene3D - 234 432 - -
Lele28g1424 466 Gene3D Actin; Chain A, domain 4 277 360 - -
Lele28g1424 466 MobiDBLite consensus disorder prediction 1 25 - -
Lele28g1424 466 CDD NBD_sugar-kinase_HSP70_actin 130 274 - -
Lele28g1424 466 SUPERFAMILY Actin-like ATPase domain 128 249 IPR043129 -
Lele28g1424 466 SMART fbox_2 39 79 IPR001810 GO:0005515
Lele28g1424 466 SUPERFAMILY F-box domain 32 93 IPR036047 GO:0005515
Lele28g1424 466 Pfam F-box-like 40 76 IPR001810 GO:0005515
Lele28g1424 466 Gene3D - 174 458 - -
Lele28g1424 466 ProSiteProfiles F-box domain profile. 33 79 IPR001810 GO:0005515
Lele28g1424 466 SUPERFAMILY Actin-like ATPase domain 244 455 IPR043129 -
Lele28g1424 466 MobiDBLite consensus disorder prediction 8 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1424 Lele-ChrLele28 10307334 10313635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1424 176 456 Cytoskeleton Gene Families AT3G12110 31.849 5.83e-40 146