Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1421 ATGTCTCTTTCGAAGAGTTGGAAGTATGAAGTTGTTTTCTGCCTTTGGTTCTTCTGCTTTTTGCTACTGGTTGCTGCGCAGGATTTTATCACTGATCCCACTGATGTTAACTCCTTGAAAACCATCAAGCAAAGTTTGGTTGATCGTGATGGAAATCTGAGAAACTGGAATCGCGGAGATCCATGCAGATCTAACTGGAGAGGGGTTGTCTGCTATAATAAGACAGCTAATGGTTATGACCACGTTAGAGAACTGCAACTGCTGAATATGAATTTATCTGGAACTTTGGCACCGGAGGTTGGCGGCTTTACTTATCTGAAAATATTGAGCTTTATGTGGAACAACATAAGTGGGAGCATCCCGAAGGAAATTGGCAATATCAAGACCTTGGAGCTCTTACTCTTGAATGGAAACAAATTAACAGGTCCTCTGCCAGAAGAGCTTGGTTATCTTCCGAACTTGAACAGAATACAAATTGATCAGAACAAAATATCAGGACCTTTACCTGCATCATTTGCAAATCTGAACATGACAAAGCACTTTCACATGAACAACAATTCAATCAGTGGACAAATCCCTCCAGAGCTCTCCCGCATGCCAAATCTTGTTCACCTTCTTCTTGACAATAACAACTTAACAGGATATCTTCCTCCTGAGCTTTCCGAGATGCCCAACATAACTATAATTCAACTTGATAACAATAACTTCAGTGGGAAAACCATTCCAGAGTCTTATGCCAACATTTCAAAATTGTTGAAATTGAGCCTTAGGAATTGCAGCTTGCAAGGACCAGTTCCTGATTTAAGCAAGATACCACAACTTGGTTATCTTGACCTGAGTTCCAATGAGTTGACTGGCTCGATTCCTACCAATAAGCTTTCGGACAACATTACAACAATTGATTTATCAAACAACAAGCTTACTGGAACCATTCCAGCCTATTTTTCTCGTCTTCCTCTTCTTCAGAGATTGTCAATTGCAAACAATGCTTTGAATGGCAGTATTCCTTCTGCCATTTGGCAGAGCAAGACTTTAAATACAACAGAAAGCTTTGTCATGGAATTTCAACATAACAGTTTTACAAGCATATCAGGCAGTACTAGCCTTCCTCCAAATGTCTCACTCTGGCTTGAGGGAAATCCTTTGTGTTCAAATGATAGCCTAGCTCAGTTCTGTGGATTAGAAGCCAATAACACTGATACTGTGGTTCCAACATACTTCAATGGTAGCTGTCCTAGTGCATCATGTCCCCCTCCTTTTGAATATTCTCCATTATCTCCAGTGAAGTGTTTCTGTGCTGCCCCTTTGATTGTTGATTATCGGCTCAAAAGTCCAGGAATTTCAGCTTTTCCTTCTTATATGGATTTATTTGAGAACTATCTGTCCAGTGGACTTGACTTATTAATTTATCAACTATACATTGATACATATTTTTGGGAAGAAGGGCCACGACTGAGAATGCTCTTGAAGCTTTATCCTGTCTATGATGTTCAGAACCAAAGCTCACATATTTTCAATAGCAGTGAGGTTCTAAGGCTAAGAAGCAAGTTCACAGGATGGTTAGTTCCTGACAACGATATATTTGGGCCTTATGAACTACTCGGCTTCCAACTCCTGGATCCTTACAAGGATTTGATAGAAACCTCTAGAGGAAGTTCAGGGATAAGCACAGGTGCACTGGTTGGCATAATAATAGGGACAATTGCCTGTGCTGTTATATTGTCTGTAATTGTCAGTCTTGTAATATTCAGAGTGCTCACGAGACGCCGGCGTTCAATATCAAAACGACATCAAACTTCAAAGATTTCCATAAAAATTGATGGTGTGAGGGCTTTTACATATGAAGAAATGGCACAGGCTACAAACAATTTTAGCAACACAGCACAAGTTGGCCAAGGGGGTTATGGAAAAGTTTATAAAGGGTTTCTTCTTGATGGCACTGTGGTTGCCATAAAGCGTGCGCAGGAGGGATCCCTGCAAGGTGAAAGGGAGTTCCTGACAGAAATACAATTATTATCCAGGTTGCATCATCGTAACCTTGTGTCTTTGATTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGCCAAATGGAACACTTAGGGATCACCTTTCTGTTAATTCAAAAGAAGGTCTGAGTTTTTCTATGAGAATGAGGATTGCACTAGGGTCAGCAAAAGGTCTTCTGTATCTACATACAGAAGCGGACCCACCGATATTCCACCGAGATGTCAAGGCTAGCAACATATTATTGGATTCAAAGTTCACAGCAAAAGTTGCTGATTTTGGACTATCACGGCTTGCCCCTGTTCCAGACATTGAAGGAGTTGTGCCAGCTCATGTATCTACAGTGGTAAAGGGGACCCCGGGTTACCTTGATCCAGAGTACTTCTTAACTCATAAGCTGACTGACAAGAGTGATGTTTACAGTCTTGGTGTTGTATTTCTGGAAGTATTGACTGGAATGCAACCAATCTCACATGGCAAAAATATTGTTAGAGAGGTTAATATTGCATACCAATCTGGTATGGTATTCTCTGTTATGGATGAACGCATGGGGTCTTACTCTTCAGAATGTGTTGAGAAATTCTTGGCTCTGTCCTTAAAGTGTTGCCAAGATGAGCCAGACGCGCGGCCTAATATGACAGAAGTGGTTCGAGAGCTCGAAAACATATGGTCTATGATGCCTGAATCTGATACCAAGAGATCTGAATCTATAACTCCTAGTAGTGATTCTGGAAAATTGGTCAGTTCATCTTCATCTTCTGCTGTAAAAACTCCCTATGTATCTGGAGATGTTTCAGGCAGTGACCTTGTCAGTGGGGTGGTACCAACCATTGCACCAAGATAG 2865 0.4101 MSLSKSWKYEVVFCLWFFCFLLLVAAQDFITDPTDVNSLKTIKQSLVDRDGNLRNWNRGDPCRSNWRGVVCYNKTANGYDHVRELQLLNMNLSGTLAPEVGGFTYLKILSFMWNNISGSIPKEIGNIKTLELLLLNGNKLTGPLPEELGYLPNLNRIQIDQNKISGPLPASFANLNMTKHFHMNNNSISGQIPPELSRMPNLVHLLLDNNNLTGYLPPELSEMPNITIIQLDNNNFSGKTIPESYANISKLLKLSLRNCSLQGPVPDLSKIPQLGYLDLSSNELTGSIPTNKLSDNITTIDLSNNKLTGTIPAYFSRLPLLQRLSIANNALNGSIPSAIWQSKTLNTTESFVMEFQHNSFTSISGSTSLPPNVSLWLEGNPLCSNDSLAQFCGLEANNTDTVVPTYFNGSCPSASCPPPFEYSPLSPVKCFCAAPLIVDYRLKSPGISAFPSYMDLFENYLSSGLDLLIYQLYIDTYFWEEGPRLRMLLKLYPVYDVQNQSSHIFNSSEVLRLRSKFTGWLVPDNDIFGPYELLGFQLLDPYKDLIETSRGSSGISTGALVGIIIGTIACAVILSVIVSLVIFRVLTRRRRSISKRHQTSKISIKIDGVRAFTYEEMAQATNNFSNTAQVGQGGYGKVYKGFLLDGTVVAIKRAQEGSLQGEREFLTEIQLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMPNGTLRDHLSVNSKEGLSFSMRMRIALGSAKGLLYLHTEADPPIFHRDVKASNILLDSKFTAKVADFGLSRLAPVPDIEGVVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLEVLTGMQPISHGKNIVREVNIAYQSGMVFSVMDERMGSYSSECVEKFLALSLKCCQDEPDARPNMTEVVRELENIWSMMPESDTKRSESITPSSDSGKLVSSSSSSAVKTPYVSGDVSGSDLVSGVVPTIAPR 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1421 954 SMART serkin_6 624 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1421 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 744 756 IPR008271 GO:0004672|GO:0006468
Lele28g1421 954 Gene3D Transferase(Phosphotransferase) domain 1 700 917 - -
Lele28g1421 954 ProSiteProfiles Protein kinase domain profile. 624 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1421 954 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 700 910 - -
Lele28g1421 954 FunFam Leucine-rich repeat protein kinase family protein 588 699 - -
Lele28g1421 954 CDD STKc_IRAK 630 896 - -
Lele28g1421 954 SUPERFAMILY L domain-like 48 398 - -
Lele28g1421 954 Pfam Protein kinase domain 626 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1421 954 ProSitePatterns Protein kinases ATP-binding region signature. 630 652 IPR017441 GO:0005524
Lele28g1421 954 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 191 293 - -
Lele28g1421 954 Gene3D Ribonuclease Inhibitor 296 386 IPR032675 -
Lele28g1421 954 MobiDBLite consensus disorder prediction 901 954 - -
Lele28g1421 954 SUPERFAMILY Protein kinase-like (PK-like) 598 894 IPR011009 -
Lele28g1421 954 Gene3D Phosphorylase Kinase; domain 1 594 699 - -
Lele28g1421 954 MobiDBLite consensus disorder prediction 901 934 - -
Lele28g1421 954 PANTHER RECEPTOR-LIKE PROTEIN 55 42 897 - -
Lele28g1421 954 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Lele28g1421 954 Gene3D Ribonuclease Inhibitor 31 295 IPR032675 -
Lele28g1421 954 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 33 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1421 Lele-ChrLele28 10259538 10270433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1421 19 906 Receptor kinase-like Gene Family AT5G01950 57.982 0.0 1018
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Lele28g1421 Pkinase 3.1e-46 CL0016