Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1420 ATGTGCAATAATTTGGTAGTCCAATACAATGGACCTGCTAGATGTTATCGTCAGATAAAGAACAAGCCGTACCCGAAATCTCGATTCTGCCGGGGTGTACCTGACCCAAAGATCAGGATTTATGATGTTGGGATGAAAAAGAAAGGGGTTGATGAGTTCCCTTTCTGTGTACATCTTGTATCTTGGGAGAAGGAGAATGTTTCAAGTGAAGCTCTTGAGGCTGCTCGAATAGCATGCAACAAATACATGGCCAAGTATTCTGGGAAAGATGCTTTCCACCTTCGTGTTCGGGTTCATCCTTTCCATGTTCTGCGAATCAACAAGATGCTTTCATGTGCTGGTGCTGATAGGCTTCAGACAGGGATGAGAGGTGCTTTTGGGAAGCCACAGGGAACTTGTGCTAGAGTCAACATTGGCCAAGTTCTTCTATCTGTTCGTTGCAAGGACAGCAACAGCCACCATGCTCAAGAGGCTCTCCGCCGTGCTAAATTCAAGTTCCCCGGTCGCCAGAAGATAATTGTTAGCAGGAAGTGGGGATTTACCAAATTTAGCCGCGCAGACTATCTGAAGTTCAAGTCAGAGGGCCGAGTTGTGCCAGATGGAGTCAATGCCAAGGTTCTTGGATGCCATGGACCTTTGGCCTTGCGGCAGCCTGGAAGAGCTTTCTTACGAGCTAATGCATAA 684 0.4708 MCNNLVVQYNGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYSGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVNIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSEGRVVPDGVNAKVLGCHGPLALRQPGRAFLRANA 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1420 227 CDD Ribosomal_L16_L10e 48 173 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele28g1420 227 FunFam 60S ribosomal protein L10 9 213 - -
Lele28g1420 227 PANTHER 60S RIBOSOMAL PROTEIN L10 12 220 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lele28g1420 227 SUPERFAMILY Ribosomal protein L16p/L10e 12 180 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele28g1420 227 Gene3D Ribosomal protein L10e/L16 10 222 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele28g1420 227 TIGRFAM uL16_euk_arch: ribosomal protein uL16 12 181 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lele28g1420 227 ProSitePatterns Ribosomal protein L10e signature. 115 136 IPR018255 GO:0003735|GO:0005840|GO:0006412
Lele28g1420 227 Pfam Ribosomal protein L16p/L10e 19 173 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1420 Lele-ChrLele28 10256105 10258795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1420 12 227 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.185 2.69e-138 385