LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele28g1386	ATGGCAGACGTGGTTGAACAACCGCCAACTCACGAGCTCTCCGAGACAGTCATCGACGTCAAGCTCTTCAATCGCTGGACCTTTGACGATGTTCAGGTAAACGACATTTCCTTGGCTGATTACATTGGTGTGGCTCCTGCCAAGCATGCTACCTATGTGCCTCACACTGCTGGGAGGTATTCAGTCAAGCGATTCAGGAAAGCACAGTGTCCAATTGTTGAGAGGCTTACCAACTCTCTTATGATGCATGGACGAAACAATGGGAAAAAACTAATGGCAGTGAGGATTATTAAGCATGCGATGGAAATTATCCACTTGCTAACTGATCTAAATCCCATCCAAGTTATTGTTGATGCTGTGATCAACAGTGGACCAAGAGAAGATGCTACACGTATTGGATCTGCTGGGGTTGTCAGACGTCAGGCTGTGGATATTTCACCTTTGCGACGTGTGAATCAGGCCATTTACCTCCTTACTACAGGAGCTCGTGAGTCTGCATTCAGGAACATTAAGACAATTGCAGAATGCTTGGCTGATGAACTTATCAATGCTGCAAAGGGATCATCAAACAGCTACGCCATCAAGAAGAAGGATGAGATCGAGAGGGTTGCTAAGGCCAACCGTTGA	627	0.4641	MADVVEQPPTHELSETVIDVKLFNRWTFDDVQVNDISLADYIGVAPAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR	208

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele28g1386	208	ProSitePatterns	Ribosomal protein S7 signature.	74	100	IPR020606	GO:0003723\|GO:0003735\|GO:0006412
	Lele28g1386	208	Gene3D	Ribosomal protein S7 domain	3	208	IPR036823	-
	Lele28g1386	208	TIGRFAM	uS7_euk_arch: ribosomal protein uS7	20	208	IPR005716	GO:0003735\|GO:0006412\|GO:0015935
	Lele28g1386	208	Pfam	Ribosomal protein S7p/S5e	62	208	IPR023798	-
	Lele28g1386	208	PANTHER	RIBOSOMAL PROTEIN S7	5	208	IPR000235	GO:0006412
	Lele28g1386	208	SUPERFAMILY	Ribosomal protein S7	21	208	IPR036823	-
	Lele28g1386	208	FunFam	40S ribosomal protein S5	4	208	-	-
	Lele28g1386	208	PIRSF	RPS7p_RPS7a_RPS5e_RPS7o	2	208	IPR000235	GO:0006412
	Lele28g1386	208	CDD	uS7_Eukaryote	21	208	IPR005716	GO:0003735\|GO:0006412\|GO:0015935

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele28g1386	Lele-ChrLele28	10008934	10010555	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele28g1386	19	208	Cytoplasmic Ribosomal Protein Gene Family	AT2G37270	92.105	1.81e-134	374

Showing 1 to 1 of 1 entries