Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1378 ATGCGAGGCACGCGCCTACTGTTAGATCAACGGTCACGATTCACATTGTTGGGTTCGGAATTTCGAGCTGCTGATCTTCCAGGGTCTTCTGCGTTTCGTTTTCCGTTGATTGTTGAGATTTTCCCCCATTTGCACGCGTGGGGTGCATGGGCAAGTTGGAGGAGAAAATGGGGGATTGCATTGGCTTCAAGACAATTCGAAATGGAAGCAAAAGTGAAGCTTGACATGATGCTTTCAACATCAGGGTTTGTCCAGCAGGGACAGGAAGAAGTGGAGAAGAAGTGTTTGAATTCGGAGCTGTGGCATGCATGTGCTGGACCCCTGGTATCACTACCAAATGCGGATACTCGTGTTGTTTACTTCCCTCAGGGTCATAGCGAGCAGGTTGCGGCCACAACTAATAGGGGAGTTGATGGGCACATACCTAATTATCCAAGCTTGCTGCCCCAGTTGATTTGCCAACTTCATAATGTCACAATGCACGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACTCTGCAGCCACTGACTCCGCAAGAGCAAAAGGAAACGTTTCTTCCTATGGAATTGGGCATAACAAGTAAGCAGCCCTCAAATTATTTTTGCAAGACATTAACAGCAAGTGACACTAGTACACATGGAGGCTTCTCTGTTCCTCGTCGTGCAGCTGAAAAAGTCTTCCCTCCCCTGGATTACTCACAGCAACCACCAGCTCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGTCATGTTTTTCGGGGACAGCCAAAACGTCACCTTCTTACAACAGGCTGGAGCGTATTTGTTAGTGCCAAGAGACTTGTAGCTGGAGATTCTGTGCTTTTTATATGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCATGCCAGTAGACCACAAACTTTGATTCCTTCATCAGTTCTATCAAATGATAGTATGCACATTGGATTGCTTGCAGCTGCTGCTCATGCTGCTGCAACTAGTAGCTGTTTTACTGTCTTCTACAATCCAAGGGCTTGTCCATCTGAGTTTGTTATTCCTCTTTCAAAATATATCAAAGCTGTGTACCATACACGTGTTTCGGTTGGTTTGCGTTTCAGAATGCTATTTGAGACTGATGAGTCAAGTGTTCGCAGATACATGGGTACAATAACTGGTATAAGTGATCTGGATCCTGTTCACTGGCCAAACTCTCACTGGCGATCAGTAAAGGTTGGTTGGGATGAATCAACAGTAGGAGAAAGACAGCCAAGGGTATCATTGTGGGAAATTGAGCCTTTGACAACATTCCCAATGTATCCATCACTATTTCCCCTGAGATTTAAACGTCCATGCTATCCCAGCCCATCATCTGCAAATGATGGAAGAGATGATGCAACTAATGGGCTAATGTGGCTTAGAGGGGGAGCTGGAGAACATAATTTGAACTCTTTAAACTTTCAGAGTGGCAGTGTGTTGCCGTGGATGCAGCAGAGGTTGGATCCAGCTTTGTTAGGAAATAATTATAATCAGCAGAACCAAGCATTGTTAGCAGCCGGTTTGCAGAACCCAGGAAATGGAGACCTACTGAGGCAACAAATGCTGCATTTTCAGCAGCCTTTCCCTTTTCTTCAACAATCAGGAAACCATAATCCTTCTTTGCAACTTCAGCAGAAGCAAGCAATTCAGCAATCAGACTCATCCAATATTCTGCAGCCACAAGCGCATGCATCGACACAGAACCTGTCACAGAACCTTCTTCAGAAACCACAAAACATTAACAATCAGGAAGACCAAGCACACCAGCAGAATAATACTTATCATGATTCGCTCTTGATTCAAAATGATCAGTTCCACCGAAGGCAACACTCTAACGTGCCTTCACCATCATATTCAAAACAGGATTTCTTGGAGTCAAGCATGAAGTTCGCTTCATCAGTTTCGCCCACACAAAATGTAATTGGTTCACTGTGTCCTGAAGGGAGTGGTAGTGATATTTTAAACCTATCCAGAACCAATCAGTCCATGGTGACTGAACAAGTGCCCCCCCAATCTTGGACATCGAAGTATCCACCTGTGCAGGTCAGTGCCTTTGGCAATTTGATGTCACAAGCAGAGTATAGTGGGAAACATTCTGCATCAGAGCCTCCACAATGTACTTCAGATAACCAAAATCCTACTTTCTTTTATAATATCGATTCATCTGGCCTCGTGCTCCCAACTACAGTCCCAGGTTACACACCTTCATCAATTGATACTGATACCTCAACTATGCAAATACGGAATCCTGGATTTCTGGGTCATCCATATGCTTGCATGCAAGATTCATCAGAATTATTGCAAAGTTCGGGGCAGGTTGACTCACAAAATAAAACCCAGACATTTGTGAAGGTTTACAAATCAGGGTCAGTTGGGCGCTCACTCGACATTTCCCGGTTCAGCAGCTATCATGAACTGAGAGAGGAGTTGGCTCAGATGTATGGAATTGAGGGGGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGACATGCTTCTCCTCGGCGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTACATCAAGATACTTTCACCTGAAGATGTCCAGAAAATGGGCGACCAAGTGGCAGGACTAGGACCTTAG 2670 0.4468 MRGTRLLLDQRSRFTLLGSEFRAADLPGSSAFRFPLIVEIFPHLHAWGAWASWRRKWGIALASRQFEMEAKVKLDMMLSTSGFVQQGQEEVEKKCLNSELWHACAGPLVSLPNADTRVVYFPQGHSEQVAATTNRGVDGHIPNYPSLLPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKETFLPMELGITSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDVEWKFRHVFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHASRPQTLIPSSVLSNDSMHIGLLAAAAHAAATSSCFTVFYNPRACPSEFVIPLSKYIKAVYHTRVSVGLRFRMLFETDESSVRRYMGTITGISDLDPVHWPNSHWRSVKVGWDESTVGERQPRVSLWEIEPLTTFPMYPSLFPLRFKRPCYPSPSSANDGRDDATNGLMWLRGGAGEHNLNSLNFQSGSVLPWMQQRLDPALLGNNYNQQNQALLAAGLQNPGNGDLLRQQMLHFQQPFPFLQQSGNHNPSLQLQQKQAIQQSDSSNILQPQAHASTQNLSQNLLQKPQNINNQEDQAHQQNNTYHDSLLIQNDQFHRRQHSNVPSPSYSKQDFLESSMKFASSVSPTQNVIGSLCPEGSGSDILNLSRTNQSMVTEQVPPQSWTSKYPPVQVSAFGNLMSQAEYSGKHSASEPPQCTSDNQNPTFFYNIDSSGLVLPTTVPGYTPSSIDTDTSTMQIRNPGFLGHPYACMQDSSELLQSSGQVDSQNKTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMYGIEGEDPLRSGWQLVFVDRENDMLLLGDDPWESFVNNVWYIKILSPEDVQKMGDQVAGLGP 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1378 889 FunFam Auxin response factor 367 439 - -
Lele28g1378 889 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 92 881 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele28g1378 889 MobiDBLite consensus disorder prediction 544 569 - -
Lele28g1378 889 ProSiteProfiles B3 DNA-binding domain profile. 203 305 IPR003340 GO:0003677
Lele28g1378 889 FunFam Auxin response factor 201 305 - -
Lele28g1378 889 Pfam Auxin response factor 329 412 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele28g1378 889 CDD B3_DNA 202 295 IPR003340 GO:0003677
Lele28g1378 889 Pfam B3 DNA binding domain 203 303 IPR003340 GO:0003677
Lele28g1378 889 ProSiteProfiles PB1 domain profile. 794 876 IPR000270 GO:0005515
Lele28g1378 889 SMART B3_2 203 305 IPR003340 GO:0003677
Lele28g1378 889 SUPERFAMILY DNA-binding pseudobarrel domain 187 332 IPR015300 -
Lele28g1378 889 FunFam Auxin response factor 789 881 - -
Lele28g1378 889 Gene3D - 789 881 - -
Lele28g1378 889 Gene3D - 201 304 IPR015300 -
Lele28g1378 889 SUPERFAMILY CAD & PB1 domains 785 866 - -
Lele28g1378 889 Gene3D - 367 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1378 Lele-ChrLele28 9928629 9938558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1378 173 888 B3 DNA Binding Superfamily AT5G37020 65.205 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele28g1378 B3 1e-19 CL0405