Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1375 ATGCTTCAACCTCGTAACCTTCTTCTTTCCTTATTTATCATCATGTTCTTGTCATTCCGGATCCATAATGGCGTCGTTTCGGAGCCTCAAACCTATCTTCTGAGGAGCGAGTGTAACCCATACTTCATTTCCAACGTATTTGTCGACTCCAACGTCACCGTCTTCAATCAAAACCTAAACGCAACGTTGCGAGACATAAAAGAGAAGATCAGAGTTCAGAACAAGCACTTCGCCACTGCACAGCAAGGCAGTGGAGGAAACCCCGCTGCCACTCTTTTTCAGTGCAGAAACTACCTCTCCACAGCCGACTGTGTCGCCTGCTTCGATGCCGCTACAGAGCATATCCGAAGATGTGCCTCCGGGACCTCTGGTGCTCATGTCGTCTACGACGGGTGCTTCCTCAGGTTCGATATTAGCAGTAGTTTCTTTGAGGAGACGACTCAAAATTTCAACATGGTATCATGTGGGAATCAGACTACTGAAGGAGAAGCCATTACATTTACATCCGATGCACAAAAAGTGTTAATGAATCTGCAAAGAGAAACACCCAGAATCACAGGTTTCTCTATAGCTACGAAGAAGCAAGTTCCTAATGGTCCAATAACTATTTATGGATTTGCTCAATGTATTGAAACTATCACTCAAAGTAAGTGTGAGGATTGCTTGAATGCTCAGTACAACAATATGCAGACTTGTCTTACCAATTCAGATGGTAGGGCTTCTGCTAATGGCTGCTTCTTGAGATATTCCACCACTTCCTTCTTTCCTGATAACCAGACCATCGATATTACACCCTTCGAAAAACAAGGTTCAACCAATAAGGGGATCATTATTGGTGGTGTTGTTGCAGGCGTATCTCTTGCTTTGATCCTCATTGCATTATTTGTCTTGATTAGCCGACGAAAAAGCCCTAAGATAATCAGTGTTCCTAGAGGAGACATACCTGGAGCAAGCAAGCTAAAAGGCACAGTTACTTTTAGTTACAAGGATTTGAAGACCGCAACCAATAATTTTAGTGAAGAAAATAAAATAGGAGAAGGTGGATTTGGCGTTGTATACAAGGGCAATTTGGCGAATGGGAAAGTAGTTGCAATCAAGAAATTAGCTGTACACCACTCCAATAAGATAGATGACGAATTTGAAAGTGAAGTGAAGCTGATAAGTAATGTTCATCACCGGAATCTTGTTCGACTTCTCGGATGTTGTAGTAAAGGCGACAACAGAATCCTTGTTTATGAATACATGAAAAATAACAGTCTCGACAGATTCTTATTTGGTGAAAAGAAAAATTCTCTCAATTGGAAGCAACGATATGAAGTTATTTTAGGAATAGCAAGGGGTTTGACTTATCTACACGAAGAATTTCATGTTCGGATTATACATAGAGATATAAAGACTAACAATATTCTCTTAGACGATGATTTCCAACCTAGAATTGCTGATTTTGGGCTGGCAAGACTTATACCCGAAGACAAAACTCATCTCAAGACAAAATTCGCAGGAACATTAGGATACACAGCACCAGAGTACGCAATTCACGGGCAATTATCAGAAAAAGTTGATATCTATAGTTATGGTATTGTTGTGTTAGAAATCATCAGTGGTCAGAGAAGTAATAAATTAAATGTTGCCGGTGATGATGAAGGCGCATACCTCCTCCAAAAAGCTTGGAAATTATATGAGAGAGGCATGCACTTAGAGTTGGTGGACAATGCTTTAGACCCTAAAGATTATGATGCAGAGGAAGTTCAAAAAATTATAGAGATTGGTTTGCTTTGCACGCAATCATATGCAGAAACAAGGCCGATGATGTCTGAAATAGCGGTTTTACTACAGAAGAAGGGTTTATTAGAGAATATGAGGCCAACTATGCCTATCTTAATTGAAACTAATTAG 1896 0.403 MLQPRNLLLSLFIIMFLSFRIHNGVVSEPQTYLLRSECNPYFISNVFVDSNVTVFNQNLNATLRDIKEKIRVQNKHFATAQQGSGGNPAATLFQCRNYLSTADCVACFDAATEHIRRCASGTSGAHVVYDGCFLRFDISSSFFEETTQNFNMVSCGNQTTEGEAITFTSDAQKVLMNLQRETPRITGFSIATKKQVPNGPITIYGFAQCIETITQSKCEDCLNAQYNNMQTCLTNSDGRASANGCFLRYSTTSFFPDNQTIDITPFEKQGSTNKGIIIGGVVAGVSLALILIALFVLISRRKSPKIISVPRGDIPGASKLKGTVTFSYKDLKTATNNFSEENKIGEGGFGVVYKGNLANGKVVAIKKLAVHHSNKIDDEFESEVKLISNVHHRNLVRLLGCCSKGDNRILVYEYMKNNSLDRFLFGEKKNSLNWKQRYEVILGIARGLTYLHEEFHVRIIHRDIKTNNILLDDDFQPRIADFGLARLIPEDKTHLKTKFAGTLGYTAPEYAIHGQLSEKVDIYSYGIVVLEIISGQRSNKLNVAGDDEGAYLLQKAWKLYERGMHLELVDNALDPKDYDAEEVQKIIEIGLLCTQSYAETRPMMSEIAVLLQKKGLLENMRPTMPILIETN 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1375 631 FunFam Cysteine-rich receptor-like protein kinase 2 150 254 - -
Lele28g1375 631 Gene3D Transferase(Phosphotransferase) domain 1 415 624 - -
Lele28g1375 631 ProSiteProfiles Gnk2-homologous domain profile. 149 254 IPR002902 -
Lele28g1375 631 ProSitePatterns Protein kinases ATP-binding region signature. 344 367 IPR017441 GO:0005524
Lele28g1375 631 Gene3D Phosphorylase Kinase; domain 1 314 414 - -
Lele28g1375 631 Pfam Protein kinase domain 339 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1375 631 ProSiteProfiles Gnk2-homologous domain profile. 37 141 IPR002902 -
Lele28g1375 631 Coils Coil 56 76 - -
Lele28g1375 631 FunFam Cysteine-rich receptor-like protein kinase 2 415 619 - -
Lele28g1375 631 Gene3D - 38 140 IPR038408 -
Lele28g1375 631 Gene3D - 147 254 IPR038408 -
Lele28g1375 631 Pfam Salt stress response/antifungal 51 137 IPR002902 -
Lele28g1375 631 Pfam Salt stress response/antifungal 155 251 IPR002902 -
Lele28g1375 631 ProSiteProfiles Protein kinase domain profile. 338 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1375 631 SUPERFAMILY Protein kinase-like (PK-like) 321 611 IPR011009 -
Lele28g1375 631 SMART serkin_6 338 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1375 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Lele28g1375 631 FunFam Cysteine-rich receptor-like protein kinase 2 309 414 - -
Lele28g1375 631 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 92 628 - -
Lele28g1375 631 CDD STKc_IRAK 344 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1375 Lele-ChrLele28 9907576 9913615 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1375 8 629 Receptor kinase-like Gene Family AT1G70520 36.177 5.26e-121 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lele28g1375 Pkinase 2.6e-50 CL0016