Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1374 ATGAGGAGCAAGAAGGGCATCTTATTGACTCAGAGAAAATATGTTCTTGATATGCTGAAAGAAACCGGTAAACTTGGAGCTGCCCCAACTAGCTTTCCTATGGTTTATAACCCGCTGCTTGATGCTGATGGTAGTGTACAATATGAAAATCCTGTTGAAGCTGCTAAGAGCAAGTTGTTCGAGCACCCAAAGAGGTACAGAAGATTAATTGGAAAATTGAATTATCTTACAGTGACCCGCCCTGATATCACTTATCTAGTGAGTGTTCTTAGCCAATTTATGATCTCTCCAACTATCCGACAGTGGGAAGCCTTAGAACATGTGTTACATTATTTGAAGGGATCTCCAGGTCGTGGGATACTGTACAAGAGTCATGGCCATATAGATATTAAGTGTTTTTGTGATGCTAATCATGGTGGATCAAAGGCCACAAGACGGTCTACTACTGGCTACTGTGTCTTCGTCGGAGGAAATTTGGTATCTTGGAGAAGCAAGAAACAAAATGTAGTGTCACGGTCGAGTGCAGAAGCGGAATACAGGGCCATGGCACAATCTATCGACTGTCATTTTATTCGAGACAAGCTCAAAGAAAATTTCATCTCTACAAGACATGTTCGATCCAGTGATCAATTAGGCGACCTCCTCACCAAAGCTCTTAATGGGGTCCGGATTGAATATCTTTGTAACAAGTTGGTTGACATTTCGGGAGCAACTGAGTTGAAAGGCCCAGTTAACTATCGGTATAAAGATCTAAAGTCTGCAACAAAAAATTTCAGTATAGAGAATAAATTAGGAGAAGGAGGTTTTGGGGATGTATACAAGGGTACTCTGAAAAATGGAGAAGTAATTGCTATAAAGAAATTGGCTTTAGAGCAATCCAAAAAGATGGATGAAGATTTTGAAAGTGAAGTGAAGCTAATAAGTAATGTTCATCATCGAAATCTTGTTCGACTTCTCGGATGTTGCAGCAAAGGCAAAGAGAGATTCCTTGTTTATGAGTACATGAAGAACAACAATGTTGGGCAATTCTTATTTGGTGAAAATAAAGGATCTCTCAACTGGAAGCAGCGTTATGGTATAATTCTAGGCACTGCAAGGGGTTTGGCTTATCTTCACGAGGGATTCCATATTTGCATCATACATAGAGATATAAAGCCTAGCAACATCCTCTTGGATGATGACTTCCAGCCTAAAATTGCAGATTTTGGATTGGCAAGGCTTTTGCCAGGGGACCAATCTCATCTCAATACAAATTTTGCGGGAACAATGGGATACACTGCACCTGAGTATGTAATGCACGGACAATTATCAGAGAAGGTTGATACCTATTGCTATGGTGTCGTAGTGTTAGAAATCATAAGTGGGCAAAAGAGTGGTGAATTAAAGGATGATGATGAAGGTGAATTCCTCCTTCAAAGGGCTTGGAAACTTTATGAGAAAGGAATGCACATAGAGTTTGTGGACAAAACCTTAGATCCAGAAGAGTATGATGCAGAAGAAGTAAAGAAAATCATAGAGATTGGATTGCTTTGCACGCAATCATCTCCTGCAGCAAGACCAACAATGTTTGAAGTTGCCGATATGATCGAAAGCAGGGGTGGTGGCTTAATGGATCACAAGCGACCCACTATGCCTGTGTATGTTGATCCTAATTTGAGGCTCAAAAGAGATGGTCAGTCTGATGGTTCATCATTATCAAATGCTACTGTCTCCATTTCTATTCCATCAGGAAGGTGA 1737 0.4053 MRSKKGILLTQRKYVLDMLKETGKLGAAPTSFPMVYNPLLDADGSVQYENPVEAAKSKLFEHPKRYRRLIGKLNYLTVTRPDITYLVSVLSQFMISPTIRQWEALEHVLHYLKGSPGRGILYKSHGHIDIKCFCDANHGGSKATRRSTTGYCVFVGGNLVSWRSKKQNVVSRSSAEAEYRAMAQSIDCHFIRDKLKENFISTRHVRSSDQLGDLLTKALNGVRIEYLCNKLVDISGATELKGPVNYRYKDLKSATKNFSIENKLGEGGFGDVYKGTLKNGEVIAIKKLALEQSKKMDEDFESEVKLISNVHHRNLVRLLGCCSKGKERFLVYEYMKNNNVGQFLFGENKGSLNWKQRYGIILGTARGLAYLHEGFHICIIHRDIKPSNILLDDDFQPKIADFGLARLLPGDQSHLNTNFAGTMGYTAPEYVMHGQLSEKVDTYCYGVVVLEIISGQKSGELKDDDEGEFLLQRAWKLYEKGMHIEFVDKTLDPEEYDAEEVKKIIEIGLLCTQSSPAARPTMFEVADMIESRGGGLMDHKRPTMPVYVDPNLRLKRDGQSDGSSLSNATVSISIPSGR 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1374 578 Gene3D Phosphorylase Kinase; domain 1 228 334 - -
Lele28g1374 578 CDD RNase_HI_RT_Ty1 131 221 - -
Lele28g1374 578 SUPERFAMILY Protein kinase-like (PK-like) 242 529 IPR011009 -
Lele28g1374 578 ProSiteProfiles Protein kinase domain profile. 258 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1374 578 ProSitePatterns Protein kinases ATP-binding region signature. 264 287 IPR017441 GO:0005524
Lele28g1374 578 SUPERFAMILY DNA/RNA polymerases 57 180 IPR043502 -
Lele28g1374 578 CDD STKc_IRAK 264 530 - -
Lele28g1374 578 FunFam Cysteine-rich receptor-like protein kinase 2 335 535 - -
Lele28g1374 578 MobiDBLite consensus disorder prediction 557 578 - -
Lele28g1374 578 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 160 556 - -
Lele28g1374 578 MobiDBLite consensus disorder prediction 553 578 - -
Lele28g1374 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 379 391 IPR008271 GO:0004672|GO:0006468
Lele28g1374 578 Pfam Protein kinase domain 259 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1374 578 Gene3D Transferase(Phosphotransferase) domain 1 335 535 - -
Lele28g1374 578 SMART serkin_6 258 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1374 578 FunFam Cysteine-rich receptor-like protein kinase 2 228 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1374 Lele-ChrLele28 9893659 9896710 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1374 244 578 Receptor kinase-like Gene Family AT1G70520 47.093 8.48e-94 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lele28g1374 Pkinase 2.1e-50 CL0016