Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1360 ATGGTTATGTTTGGACCTGTTACTCTCTTTCTTCCCCTGTTCACTGCGTTCATATCCTCCAACGGCGTCGTTTCCGACCCCCAGACCTATCTTCTCAACCCTGGCTGCTTCCAGTACGATAGGATAGATCCAATAGACGCTAATTCCTTCAATCAAAGCCTAAACGCAGCGTTTGCAGATCTCGCCAACCAGAGCACTCACTTCGCCAAGGCGCAGCAAGCCACCGGAGCCACCCCCGTGTTCGCTCTTTTTCAGTGCAGAAGCTACCTCTCTGCCGCCGACTGTGCCGCCTGCTTCAACGTCGCTGCCGCTCAAATCCGAAACTGCTCCGCTGGAACCAACGCCGCCCGTGTCATCTACGACGGCTGCTTCCTCAGGTATGAGAGCAGCAATTTCTTGGAGCAAGCAACAGGCTCTTTCAATTCTGCATCATGTGGAAATCAGACAACAGAAGTAACCACAACAACAACATTTAACTCAAGTATTCAACAAGTGTTAATGAATCTGCAAACAGCAACACCCAGAATCACTGGTTTCTCTGCAGCCACAAAGACGCAAGTGCCTGATAATAATAATAATAACAACAACAACAACAAAACCATTTATGCGTATGCACAATGTACTGAAACTATCTCACAGAGTGGCTGCGAGGATTGCTTGAAGCAAGGCGTCAACACTATGCAGACTTGTCTTCCCAGTTCAGATGGTAGGGCTTTTGATGCTGGCTGTTTCATGAGATACTCCACCTCTTCCTTCTTTCCTCATAATTACAACACCATTGATATCACTACTCCCTCAGGCAAACAAGGTTCAAGTAACAAAAAAGGGGCCATTATTGGTGGAGTTGTTGGAGGTGTGGCTTTTGTTTTGTTTCTCCTTTCATTATTTGCCTGGTGGATGTATTTTAGACGGTCAGAAAGGTCTGAAAGGGTTCCTAGAGGTGAGATAATGGGAGAATCCAAGTTCAAAGGCCCACTTAATTACAATTATAACGAACTGAAATCTGCCACCAAGAATTTCAGTGAAACGAATAAATTAGGAGAAGGAGGATTTGGTGCTGTATACAAGGGAACTTTGAAAAATGGAAAAATAGTTGCAGTCAAGAAACTTGTTATGCGACAATCCAACAGGATGGATGAAGAATTTGAGAGTGAAGTGAGGCTAATAAATAATATTCATCATCGAAATCTTGTTCGGCTTCTAGGATGCTGCAGTAAAGGCAACGAGAGAATTCTTGTTTATGAATACATGAAAAACACCAGTCTCGACAGATTCTTATTCGGTAGCAACAAAGGTTCTCTCCGTTGGAAGCAACGATATGATATAATCTTAGGCATAGCAAGGGGTTTGACCTATCTGCATGAGGAATTTCACATTTGTATCATACATAGAGATATAAAGACTAACAACATTCTTCTTGATGATGATTTTCAACCTAAGATTGCTGATTTTGGGTTGGCAAGACTTTTACCTGAGAATCAAACTCATCTCAGCACTAGATTTGCAGGAACATTGGGATACACAGCACCTGAATATGCAATTCATGGCCAGTTATCAGAAAAAGCTGATACTTACAGCTATGGTATTATCGTCTTAGAAATCATCAGTGGCCAGAGGAACAGCGAACTAAAGGTTGATGCCCATGCTGATGGAGAATTCCTCCTTCAACAAGCTTGGAAACTATATGAGAGAGGCATGCACTTAGAGTTGGTAGACAATACCTTAGACCCTAATGACTATGATGCAGAAGAGGTGAAGAAAATCATAGAGATTGGTCTGCTTTGCACACAAGCATCGCCTGCAATAAGGCCAACAATGTCTGAAGTAGTTGTTTTGCTGCAAAGTAATAAAGGCTTATCAAAGAATATGAGACCCACCATGCCTCTCTTTGTTGAAGCAGATTCTACTTATACGGCTTCCTCAATATCCAATGCTACTATCTCTACTTCCATGGTATCAGCAAGGTCATGA 1971 0.4282 MVMFGPVTLFLPLFTAFISSNGVVSDPQTYLLNPGCFQYDRIDPIDANSFNQSLNAAFADLANQSTHFAKAQQATGATPVFALFQCRSYLSAADCAACFNVAAAQIRNCSAGTNAARVIYDGCFLRYESSNFLEQATGSFNSASCGNQTTEVTTTTTFNSSIQQVLMNLQTATPRITGFSAATKTQVPDNNNNNNNNNKTIYAYAQCTETISQSGCEDCLKQGVNTMQTCLPSSDGRAFDAGCFMRYSTSSFFPHNYNTIDITTPSGKQGSSNKKGAIIGGVVGGVAFVLFLLSLFAWWMYFRRSERSERVPRGEIMGESKFKGPLNYNYNELKSATKNFSETNKLGEGGFGAVYKGTLKNGKIVAVKKLVMRQSNRMDEEFESEVRLINNIHHRNLVRLLGCCSKGNERILVYEYMKNTSLDRFLFGSNKGSLRWKQRYDIILGIARGLTYLHEEFHICIIHRDIKTNNILLDDDFQPKIADFGLARLLPENQTHLSTRFAGTLGYTAPEYAIHGQLSEKADTYSYGIIVLEIISGQRNSELKVDAHADGEFLLQQAWKLYERGMHLELVDNTLDPNDYDAEEVKKIIEIGLLCTQASPAIRPTMSEVVVLLQSNKGLSKNMRPTMPLFVEADSTYTASSISNATISTSMVSARS 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1360 656 Gene3D - 39 132 IPR038408 -
Lele28g1360 656 Gene3D - 138 252 IPR038408 -
Lele28g1360 656 FunFam Cysteine-rich receptor-like protein kinase 2 304 416 - -
Lele28g1360 656 Gene3D Phosphorylase Kinase; domain 1 303 416 - -
Lele28g1360 656 CDD STKc_IRAK 346 614 - -
Lele28g1360 656 FunFam Cysteine-rich receptor-like protein kinase 2 417 621 - -
Lele28g1360 656 Pfam Salt stress response/antifungal 145 249 IPR002902 -
Lele28g1360 656 Pfam Salt stress response/antifungal 47 129 IPR002902 -
Lele28g1360 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Lele28g1360 656 SMART serkin_6 340 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1360 656 ProSiteProfiles Gnk2-homologous domain profile. 140 252 IPR002902 -
Lele28g1360 656 ProSiteProfiles Gnk2-homologous domain profile. 32 132 IPR002902 -
Lele28g1360 656 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 82 644 - -
Lele28g1360 656 ProSiteProfiles Protein kinase domain profile. 340 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1360 656 FunFam Cysteine-rich receptor-like protein kinase 2 140 252 - -
Lele28g1360 656 ProSitePatterns Protein kinases ATP-binding region signature. 346 369 IPR017441 GO:0005524
Lele28g1360 656 Pfam Protein kinase domain 341 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1360 656 SUPERFAMILY Protein kinase-like (PK-like) 324 636 IPR011009 -
Lele28g1360 656 Gene3D Transferase(Phosphotransferase) domain 1 417 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1360 Lele-ChrLele28 9440420 9445040 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1360 64 629 Receptor kinase-like Gene Family AT1G70520 37.847 5.08e-126 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lele28g1360 Pkinase 1.6e-50 CL0016