LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele28g1356	ATGACCATTGATCTCACACCCTTCTTGAAACAAGGTTCAAGCAAGAGGGGAGCTATTATTGGTGGGGTTCTAGGTGGTGTAGCTTTTGTTTTGATTGTCCTTGCAGTGTTTCTTTTGATTATACAATCCAAGAGGGCAAAGAAGCTTCCTAGGGTGACAGGGGACATATTGGGAGCAACAGAGTTGAAAGGCCCAGTTAATTACAGGTATAAGGATTTGAAGATTGCAACAAAAAATTTTAGTGAAGAAAATAAACTGGGAGAAGGAGGATTTGGTGATGTATACAAGGGCACTCTTAAGAATGGCAAAATAGTTGCAGTCAAGAAATTAGCTTTACGCAACACCAAGAGGATAGAGGAAGATTTTGAAAGTGAAGTGAAACTTATAAGTAATGTTCATCATCGGAATCTTGTTCGGCTTTTGGGATGTTGCAGTAAAGGCCAAGAGAAGATCCTTGTTTATGAATACATGAAAAACAACAGTCTGGACAGATTCTTATTTGGTGAAAACAAAGGTTCTCTCAGCTGGAAGCAACGATATGAAATAATTTTAGGCACGGCAAGGGGTTTGGCCTATTTACATGAAGAATTCTATGTTTGTATCATACATAGAGATATAAAGACCAACAACATCCTATTAGATGATGATCTTCAACCTAGAATTTCTGATTTTGGGTTGGCAAGACTTCTACCAAGGGACCAATCTCACCTTAGCACAAAGTTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATTCATGGCCAATTATCAGAGAAGGCGGATACCTATAGTTATGGAGTTGTAGTCCTAGAAATCATCAGCGGCCAAAAAAGCTGTGAATTAAAGGTTGATCCTGAAGTTGAAGGCGAATTCCTCCTTAAACAAGCCTGGAAACTATATGAGAAAGACATGCACTTAAAGTTGGTGGACGATACCTTAGACCCTAATGACTATGATCCGGAAGAAATGAAGAAAATCATAGAGATCGGTTTGCTTTGTACCCAAGCTTCTCCTGCGATAAGGCCAACAATGTCTGAAGTTGTCCTTATGCTTAGAAGCAAGGGCTTGTTGGGGCAATTGAAACCCACTATGCCTGTCTTTATCGAAACTAATTCGAGGTCTAGGGAAGGCAACTTTACCTCATCTGCTTCCCTTAAATCCAATGCTACAGCCTCCACTATTACACTATCAGGAAGATGA	1206	0.4013	MTIDLTPFLKQGSSKRGAIIGGVLGGVAFVLIVLAVFLLIIQSKRAKKLPRVTGDILGATELKGPVNYRYKDLKIATKNFSEENKLGEGGFGDVYKGTLKNGKIVAVKKLALRNTKRIEEDFESEVKLISNVHHRNLVRLLGCCSKGQEKILVYEYMKNNSLDRFLFGENKGSLSWKQRYEIILGTARGLAYLHEEFYVCIIHRDIKTNNILLDDDLQPRISDFGLARLLPRDQSHLSTKFAGTLGYTAPEYAIHGQLSEKADTYSYGVVVLEIISGQKSCELKVDPEVEGEFLLKQAWKLYEKDMHLKLVDDTLDPNDYDPEEMKKIIEIGLLCTQASPAIRPTMSEVVLMLRSKGLLGQLKPTMPVFIETNSRSREGNFTSSASLKSNATASTITLSGR	401

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele28g1356	401	ProSitePatterns	Protein kinases ATP-binding region signature.	86	109	IPR017441	GO:0005524
	Lele28g1356	401	ProSiteProfiles	Protein kinase domain profile.	80	369	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele28g1356	401	FunFam	Cysteine-rich receptor-like protein kinase 2	157	361	-	-
	Lele28g1356	401	CDD	STKc_IRAK	86	353	-	-
	Lele28g1356	401	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	201	213	IPR008271	GO:0004672\|GO:0006468
	Lele28g1356	401	FunFam	Cysteine-rich receptor-like protein kinase 2	43	156	-	-
	Lele28g1356	401	SMART	serkin_6	80	353	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele28g1356	401	Pfam	Protein kinase domain	81	350	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele28g1356	401	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	23	386	-	-
	Lele28g1356	401	Gene3D	Phosphorylase Kinase; domain 1	45	156	-	-
	Lele28g1356	401	Gene3D	Transferase(Phosphotransferase) domain 1	157	359	-	-
	Lele28g1356	401	SUPERFAMILY	Protein kinase-like (PK-like)	62	353	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele28g1356	Lele-ChrLele28	9404707	9407450	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele28g1356	2	353	Receptor kinase-like Gene Family	AT1G56120	48.045	1.27e-103	324

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lele28g1356		Pkinase	9.5e-52	CL0016