Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1343 ATGAATTATAGACACTTCATAATCCCTGTAACAACTTTCTCTTCTTTTAACTGCAGTTTGCTCTATCTTTCCCTCTCTTCTTGCCTCCACCCTTCTCTCTCTCTCCCTCTCTTGAGCTCTCAGGGGAAATCCATGGAAATCTCACTTGCTCTGTTTATCACACTAACACTTCTACTCACACTTTCTTCAACAATCACTTCCCATTACTCCTCCTTCTCCTCCAATTCTTCTTCTGCTCAGCATTCTTCATCTTCCTCTTCGCTTTCCGAATGGCGATCTGCCCACGCTACTTACTACGCCGCCGCAGATCCCAGGGATGCGGTAGGAGGCGCGTGTGGCTATGGTGACCTTGTTAAAGCTGGTTACGGCATGGGCACTGTGGGTCTCAGTGAGTCTCTCTTCGAACGGGGCCAGATCTGTGGTGCCTGCTTCGAGCTCCGCTGCGTCGATGACCTTCGTTGGTGTATCCCCGGAACCTCCATTATCGTCACTGCAACGAATTTCTGTGCACCTAACTATGGCTTCACCGCTGAGGGAGGTGGCCGTTGTAACCCTCCCAACCAGCATTTCGTGCTCCCGATTGAAGCTTTCGAGAAGATCGCTATTTGGAAAGCTGGGAACATGCCGGTTCAGTATCGCAGGATAAAGTGCCGAAAGCAAGGAGGAATGCGGTTTACAGTCACAGGTTCTGGGATTTATATATCAGTCCTGATCAGCAATGTAGCAGGCGCTGGAGACATTGTGGCGGTGAAGGTGAAGGGGTCAAGAACAGGTTGGCTTCCAATGGGTCGGAATTGGGGCCAAAACTGGCATGTGAATGCATTGCTACAGAATCAACCTCTTTCATTTGAGGTCACTGGTAGTAATGGCCTAACAGTGACGTCTTACAACGTTGCTCCCAAAGATTGGAGCTTCAGACAAACCTTCGAAGGCAAGCAATTTGAGTCATAA 951 0.4921 MNYRHFIIPVTTFSSFNCSLLYLSLSSCLHPSLSLPLLSSQGKSMEISLALFITLTLLLTLSSTITSHYSSFSSNSSSAQHSSSSSSLSEWRSAHATYYAAADPRDAVGGACGYGDLVKAGYGMGTVGLSESLFERGQICGACFELRCVDDLRWCIPGTSIIVTATNFCAPNYGFTAEGGGRCNPPNQHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKQGGMRFTVTGSGIYISVLISNVAGAGDIVAVKVKGSRTGWLPMGRNWGQNWHVNALLQNQPLSFEVTGSNGLTVTSYNVAPKDWSFRQTFEGKQFES 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1343 316 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 232 311 IPR007117 -
Lele28g1343 316 Pfam Expansin C-terminal domain 223 300 IPR007117 -
Lele28g1343 316 Gene3D - 222 314 IPR036749 -
Lele28g1343 316 Pfam Lytic transglycolase 127 212 IPR009009 -
Lele28g1343 316 SUPERFAMILY PHL pollen allergen 219 311 IPR036749 -
Lele28g1343 316 PRINTS Expansin/Lol pI family signature 90 105 IPR007118 GO:0005576
Lele28g1343 316 PRINTS Expansin/Lol pI family signature 130 148 IPR007118 GO:0005576
Lele28g1343 316 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Lele28g1343 316 PRINTS Expansin/Lol pI family signature 205 221 IPR007118 GO:0005576
Lele28g1343 316 PRINTS Expansin/Lol pI family signature 108 126 IPR007118 GO:0005576
Lele28g1343 316 PRINTS Expansin/Lol pI family signature 297 311 IPR007118 GO:0005576
Lele28g1343 316 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 109 222 IPR007112 -
Lele28g1343 316 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Lele28g1343 316 SUPERFAMILY Barwin-like endoglucanases 90 240 IPR036908 -
Lele28g1343 316 PRINTS Expansin signature 121 135 IPR002963 GO:0009664
Lele28g1343 316 PRINTS Expansin signature 180 197 IPR002963 GO:0009664
Lele28g1343 316 PRINTS Expansin signature 148 159 IPR002963 GO:0009664
Lele28g1343 316 PRINTS Expansin signature 233 254 IPR002963 GO:0009664
Lele28g1343 316 PRINTS Expansin signature 161 171 IPR002963 GO:0009664
Lele28g1343 316 PRINTS Expansin signature 197 210 IPR002963 GO:0009664
Lele28g1343 316 PRINTS Expansin signature 221 233 IPR002963 GO:0009664
Lele28g1343 316 PRINTS Expansin signature 268 289 IPR002963 GO:0009664
Lele28g1343 316 PRINTS Expansin signature 297 313 IPR002963 GO:0009664
Lele28g1343 316 PANTHER EXPANSIN-A15 57 314 IPR002963 GO:0009664
Lele28g1343 316 Gene3D - 74 218 IPR036908 -
Lele28g1343 316 SMART dpbb_1 126 212 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1343 Lele-ChrLele28 9230925 9233766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1343 90 316 Expansin Gene Family AT3G03220 83.700 2.29e-148 416