Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1328 ATGTCTTGCCAACCCGAGGTTTCGGATATGCGGGCCCCACCTCCATGTGCGATTCTGTTCCTTCTTCCCCTTGTTCGCTTTGCTTTCTCATCCCTCTCTGCTCTGGTATCCAGCTATACCCTTTACCGCCATTTACTCATCCCTTCTTCTGTCCTGCTCCTCCTCCTCCTCCTCCTCCTCCCTCGTCATTGCTTTCGCTCTCTCGCTTTCTTTCTCACGAGAACGAACATGAGGCAAAAAACCCAATTAAAGTTCAAGCCTTTACTCATCTTCCTTTCTGGGTTATTCTCAGTCTTCGTCTTCGTCGAGTCTCAAGCAAACCCTAGCCAAGATGTTCCTGCAATGGAAGCTCTCAAGAAGAGCCTCAACGTCCCTGAAATTGGATGGTCCGATTCGGACCCCTGCAAGTGGGACCATGTTGGCTGCGATGAAGGTCGGGTCACGCGGATCCAAATTGGACGTCTAGGTCTTCAAGGTACGCTTCCTCCGAGTCTTGGACATCTCACTGAGTTACAGCGCTTGGAGCTTCAGTATAATAACATTTCGGGTCCTCTTCCTAGCTTAAAGGGGTTGGGTTCTTTGCAAGTGCTTCTTGTTAGTAACAACCAATTTAGTTCGATCCCTAGAGATTTTTTCACTGGCATGTCTCAACTTCAATCCGTGGAGATCGATAACAACCCATTTGAGGAATGGGAGATACCTGAAAGTCTTCGAGACGCTTCGTCTCTTCAGAACTTCTCTGCCAACTCGGCTAATATCACAGGGAAAATACCAGATTTTCTTAATGCAGGTGTGTTTCCTGGTTTGACCCTTTTGCATTTGTCCTTCAATAACCTCGAGGGTGGGTTTCCGGCGAGCTTTTCTGGTCTGCCGATTGAGACTTTGTGGGTTAATGGGCAGACAGGTAAACTTAATGGAAACATAGATTTTATGCAGAATATGACTTCCTTGAAGGAGGTTTGGTTACATTCAAATGCATTATCGGGTCCATTACCAGATTTTTCAGGCTTGAAGAATTTGGAGACCTTGAGTTTAAGGGATAATTCGTTTACCGGTCCGGTTCCGTTGTCATTGATGAGTCTTAAATCATTGGAAGCTGTAAATTTGACTAATAACTTACTTCAAGGGCCTGTGCCAGTGTTCAATCCAGGGGTTCAAGTGGATATGACTAAGGATTCAAATGACTTTTGCTTGCCAAGTCCTGGGGATTGCGATCCTCAGGTGAATATTCTGCTTTCCATTGTTAAATTTATGGGATATCCTCAAAGGTTTGCTAAGGAATGGAAGGGAAATGATCCATGTAATGATTGGCTTGGGATTACTTGTAGTAATGGGAACATTACTGTTGTTAATTTTCAGAGGATGGGTCTATCTGGTACCATATCCCCTGAGTTTGCTTCGCTCAAATCGCTGCAAAGAATTATGCTTGCCGATAACGCTCTCACTGGCACGATTTCGGGAGAGCTCAGTACACTTCCTAGGCTTACTGAACTGAATCTCGCGAACAATCAGCTTTATGGGAAAGTCCCGTCTTTTAGGAGTAATGTAATCGTTAACACGAATGGTAACAAGGACATAGGCAAGGATAGAAGCAGTTCAAACCCTCCAGGTTCAGCATCTCCAAACCCTACGAGTCAAGGTACATCAGGAGAAAATGGTGGGATTTCTGCGAATGGTGGCAAAAAATCTTCTCATGTGGCAGTGATTGTAATCGCTGCAGTTGGAGGTGTGTTTTTGGTTTCTATGATTGGTGTCATAGTTTTCTGCTTGTATAGAATGAAGCAAAAGCAGTTAAGCAGGGTACAGAGCCCGAATGCACTGGTAATTCACCCTCGTCATTCTGGATCGGATAACGAAAGTTTGAAAATTACAGTTGCTGGCTCGAGTGTCAGTGTTGGCACAGCTAGTGAAACTCAAACAGTACCTGGCAGTGAGGCGGGAGGAGATATCCAAATGGTTGAAGCCGGAAATTTGGTCATTTCCATACAAGTCCTTCGGAACGTGACCGACAATTTCAATGAAAAGAATATCTTGGGACAAGGCGGTTTTGGAACGGTATACAAAGGCGAACTTCACGATGGTACCAAAATTGCGGTGAAAAGAATGGAGTCTGGAGCAATAACTGGAAAGGGCGTATCAGAATTCAAATCCGAAATCACTGTTTTGACAAAAGTTCGTCACCGGCATCTTGTTGCACTTCTCGGCTACTGCTTGGATGGGAATGAAAAGCTTTTGGTGTATGAATACATGCCTCAGGGTACACTAAGTAGGCATCTGTTTAACTGGCCGGAAGAAGGATTGCAACCCTTGGACTGGAATCGGAGGTTGACCATTGCTTTAGATGTCGCTAGGGGTGTCGAGTACCTTCACGGCTTAGCCCATCAAAGTTTTATACATAGAGACTTAAAGCCCTCAAACATTCTTCTTGGAGATGATATGAGAGCGAAGGTCGCAGATTTTGGTCTCGTCCGTCTTGCTCCAGAAGGAAAAGGCTCGATAGAAACACGAATTGCTGGAACGTTCGGATACCTGGCACCAGAATATGCAGTTACTGGCCGTGTGACGACTAAAGTAGATGTATACAGTTTTGGGGTGATACTGATGGAAATCATAACTGGAAGGAAAGCGCTCGATGAAACCCAACCCGAGGACAGCATGCACCTTGTAACTTGGTTCCGCAGAATGTATATAAATGAAGAATCGTTTAGCAAGGCTATCGACCCCACGATCGATCGCAATGAGGAAACTCTTGCCAGCATTCGGCCAGTGGCGGAGCTAGCCGGCCACTGCTGTGCACGAGAGCCATATCAAAGACCGGACATGGGCCATGCCGTGAATGTTCTTTCCTCGTTGGCAGAACTCTGGAAGCCATCTGATCAGAGTTGTGAAGATATATATGGCATTGATCTTGACATGTCTTTGCCTCAAGCGCTTAAGAAATGGCAGGCTTATGAAGGTAGAGGAGGAGGTTCAATGGACTCATCTTCTTCTTCGCTCCTTCCGAGCTTGGACAACACGCAGACGAGCATACCGACATGTCCATATGGTTTTGCCGAGTCTTTCACATCAGCAGATGGGAGGTGA 3084 0.4578 MSCQPEVSDMRAPPPCAILFLLPLVRFAFSSLSALVSSYTLYRHLLIPSSVLLLLLLLLLPRHCFRSLAFFLTRTNMRQKTQLKFKPLLIFLSGLFSVFVFVESQANPSQDVPAMEALKKSLNVPEIGWSDSDPCKWDHVGCDEGRVTRIQIGRLGLQGTLPPSLGHLTELQRLELQYNNISGPLPSLKGLGSLQVLLVSNNQFSSIPRDFFTGMSQLQSVEIDNNPFEEWEIPESLRDASSLQNFSANSANITGKIPDFLNAGVFPGLTLLHLSFNNLEGGFPASFSGLPIETLWVNGQTGKLNGNIDFMQNMTSLKEVWLHSNALSGPLPDFSGLKNLETLSLRDNSFTGPVPLSLMSLKSLEAVNLTNNLLQGPVPVFNPGVQVDMTKDSNDFCLPSPGDCDPQVNILLSIVKFMGYPQRFAKEWKGNDPCNDWLGITCSNGNITVVNFQRMGLSGTISPEFASLKSLQRIMLADNALTGTISGELSTLPRLTELNLANNQLYGKVPSFRSNVIVNTNGNKDIGKDRSSSNPPGSASPNPTSQGTSGENGGISANGGKKSSHVAVIVIAAVGGVFLVSMIGVIVFCLYRMKQKQLSRVQSPNALVIHPRHSGSDNESLKITVAGSSVSVGTASETQTVPGSEAGGDIQMVEAGNLVISIQVLRNVTDNFNEKNILGQGGFGTVYKGELHDGTKIAVKRMESGAITGKGVSEFKSEITVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWPEEGLQPLDWNRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEIITGRKALDETQPEDSMHLVTWFRRMYINEESFSKAIDPTIDRNEETLASIRPVAELAGHCCAREPYQRPDMGHAVNVLSSLAELWKPSDQSCEDIYGIDLDMSLPQALKKWQAYEGRGGGSMDSSSSSLLPSLDNTQTSIPTCPYGFAESFTSADGR 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1328 1027 FunFam Receptor-like kinase TMK4 109 402 - -
Lele28g1328 1027 FunFam receptor protein kinase TMK1 633 749 - -
Lele28g1328 1027 Pfam Leucine rich repeat N-terminal domain 109 143 IPR013210 -
Lele28g1328 1027 Pfam Leucine rich repeat N-terminal domain 405 443 IPR013210 -
Lele28g1328 1027 Gene3D Ribonuclease Inhibitor 406 530 IPR032675 -
Lele28g1328 1027 Gene3D Ribonuclease Inhibitor 109 404 IPR032675 -
Lele28g1328 1027 ProSiteProfiles Protein kinase domain profile. 672 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1328 1027 Gene3D Phosphorylase Kinase; domain 1 633 749 - -
Lele28g1328 1027 Pfam Protein kinase domain 672 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1328 1027 FunFam Leucine-rich repeat receptor-like kinase 406 529 - -
Lele28g1328 1027 ProSitePatterns Protein kinases ATP-binding region signature. 678 700 IPR017441 GO:0005524
Lele28g1328 1027 CDD STKc_IRAK 678 951 - -
Lele28g1328 1027 SMART serkin_6 672 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1328 1027 FunFam receptor protein kinase TMK1 750 967 - -
Lele28g1328 1027 ProSitePatterns Serine/Threonine protein kinases active-site signature. 797 809 IPR008271 GO:0004672|GO:0006468
Lele28g1328 1027 PANTHER OSJNBA0070M12.3 PROTEIN 95 1027 - -
Lele28g1328 1027 SUPERFAMILY L domain-like 141 512 - -
Lele28g1328 1027 Gene3D Transferase(Phosphotransferase) domain 1 750 967 - -
Lele28g1328 1027 MobiDBLite consensus disorder prediction 520 558 - -
Lele28g1328 1027 SUPERFAMILY Protein kinase-like (PK-like) 654 956 IPR011009 -
Lele28g1328 1027 SMART LRR_typ_2 191 214 IPR003591 -
Lele28g1328 1027 SMART LRR_typ_2 266 289 IPR003591 -
Lele28g1328 1027 SMART LRR_typ_2 492 514 IPR003591 -
Lele28g1328 1027 SMART LRR_typ_2 168 190 IPR003591 -
Lele28g1328 1027 SMART LRR_typ_2 314 336 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1328 Lele-ChrLele28 9020641 9024118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1328 159 954 Receptor kinase-like Gene Family AT5G07280 32.029 2.27e-88 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Lele28g1328 Pkinase 9.3e-46 CL0016