Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1327 ATGGTTTTGTCAGGGACACTAAGGAAAGTTTTCGGACGTGTCCACAAGGAGAAAATCCTTCCCGGCGGAAAACTCGACTTGGAACCTGTGATTCCGACGCAGTTCCGGTGCCCTGTGAGCCTTGAACTGATGAAAGACCCGGTGACGCTGTGCACCGGAATCACCTACGACAGGGACAGCACTGAGAGGTGGATTGAATCTGGGAACAGCACTTGCCCCGTGACCAAGCAGGTTCTTTCGAGCACTCAAATGATCCCAAATCACGCCATTCGGAGAATGATACAGGACTGGTGCGTGGACAACCAGTCTTACGGGATCGAAAGAATTCCCACTCCGAGGATCCCCGTCGCGCCGTACGAGGTATCGGAGACTTGTTCCAGGGTAAATGTCGCCACTCGTAATGGGGATGCCAAAAAGTGTCAAGAATTGGTGGGGAAGATTAAGAATTGGGGTAAAGAGAGCGAGAGGAACAAGAGGTGTATAGTGGAGAATGGTGCTTGTGCAGTGTTAGCCTCTGCCTTTGATTCTTTCTCACGTGGGACCGTCGAGGAACATAAAGTAGTTCTAGAGGAGATCTTGGGGGTGCTCCCATGGATGATGAATCCATCTCAAGAAGATGCAAGATCGAAATTGAGGTCTGAGGCATCTTTGAATTGCTTGGTTTGGTTTCTGAATGGAAACGACCTTTCGGCAAGGCAAAATGCAGCCATGGTGCTCAAGGAAATGCCTGTGAGAGCTCTAGCTAAAACTGAAGGCTTAATTGAAGCTTTGGTGAAGATGATTAAAGAGCCTACAGGACCTAATGCAACCAAAGCAAGCTTGACCAATATTTTCCAGTTGGTTTCCTCATCAAATGACAAAGAGAGAATCTCACTGAGATTTGTGGAACTGGGTCTGGTTTCTTTTTTGCTGGAGGCCATTGTTGATGCAGACAAGAGCATATGTGAGAAGGCTTTGGGTGTGTTGGATTGTATCTGTGATTGTAAAGAAGGAAAGGAAGAGGCCATGTCTAATGCTCTAACCTTGCCTCTTGCAATTAAGAAGATCCTAAGGGTATCAGCGTTGGCAACTGAGTTTTCAGTTTCCATTCTCTGGAAGCTCTGTGACAAGGAAGATGAAGAGGTTCTAATTGAAACAGTTCAACTTGGAGCTTTTCAGAAGCTCCTGGTGTTGTTGCAGGTGGGGTGTGAAGAAAGCATGAAGGAGAAGGTCACTGAATTGTTGAAACTGTTGAATGCTTATAGAAGCAGAGCGGAATGTGTTGATTCATCCTTAGATTTCAAGGGATTGAAGGTTCTATCTGCTAGAGGAGTTGGTGCCATGGCTGATTCGACAAGAATACGCATTGCGGATCTAAGAGAGTCCAGTAATCATCCATTATCTGGTGCTGTTGTACAGGGCTTTAGGGTCCGTATGATACTTGAGTTGGGCTCAATTCCTGCAATATTTGGACAAGTCATGGCCCCCTATGTTCTGACACAACTAGCAGGGTGGCCATTTCAAACAGAACCTGTAGTCAATTTTGACATGGATCATTACCATACTCTTCATCAGCGCCTAATTGAGCATGAGGAGTCATTGTATGGCTCAGCTGTGCATGTGCAGATTAACGACTCTGAAACACAACATAAATCAGAAATTCACATTGGTAGACTAGGCCATGAAGCTTTATTACTGCGGTAA 1683 0.4599 MVLSGTLRKVFGRVHKEKILPGGKLDLEPVIPTQFRCPVSLELMKDPVTLCTGITYDRDSTERWIESGNSTCPVTKQVLSSTQMIPNHAIRRMIQDWCVDNQSYGIERIPTPRIPVAPYEVSETCSRVNVATRNGDAKKCQELVGKIKNWGKESERNKRCIVENGACAVLASAFDSFSRGTVEEHKVVLEEILGVLPWMMNPSQEDARSKLRSEASLNCLVWFLNGNDLSARQNAAMVLKEMPVRALAKTEGLIEALVKMIKEPTGPNATKASLTNIFQLVSSSNDKERISLRFVELGLVSFLLEAIVDADKSICEKALGVLDCICDCKEGKEEAMSNALTLPLAIKKILRVSALATEFSVSILWKLCDKEDEEVLIETVQLGAFQKLLVLLQVGCEESMKEKVTELLKLLNAYRSRAECVDSSLDFKGLKVLSARGVGAMADSTRIRIADLRESSNHPLSGAVVQGFRVRMILELGSIPAIFGQVMAPYVLTQLAGWPFQTEPVVNFDMDHYHTLHQRLIEHEESLYGSAVHVQINDSETQHKSEIHIGRLGHEALLLR 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1327 560 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Lele28g1327 560 CDD RING-Ubox_PUB 35 77 IPR045210 -
Lele28g1327 560 Gene3D - 128 244 IPR011989 -
Lele28g1327 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 104 IPR013083 -
Lele28g1327 560 SUPERFAMILY RING/U-box 30 107 - -
Lele28g1327 560 FunFam RING-type E3 ubiquitin transferase 31 102 - -
Lele28g1327 560 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Lele28g1327 560 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Lele28g1327 560 PANTHER WDSAM1 PROTEIN 28 422 IPR045185 GO:0061630
Lele28g1327 560 SUPERFAMILY ARM repeat 140 411 IPR016024 -
Lele28g1327 560 Gene3D - 245 436 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1327 Lele-ChrLele28 9010692 9014840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1327 21 431 U-box Gene Family AT5G37490 47.368 5.29e-118 354