Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1326 ATGACCAGGAGGAAGGTGAAGCTCGCGTCCATTGACAATGAATCTGTGAGGAAGACGACATTCAGGAAGAGGAAGAATGGTATGGTGAAGAAGGCAACTGAACTTTCCACCCTTTGTGGGGTTGAAGCATGCATGATAATTTACAGTCCTTATGATTCTGAGCCTGAAATTTGGCCTTCCTCCATGGGAGTCCAAGGCACAATTGTGAGGTTCAGACAGCTGCCGGAGATGGAGCAGGTCAAGAAGATGATGAACCAGATGAGCTTCACGAGGGAACGGATCCAGAAAATCAGCGAGCAGGTGACGAAGATGAGGAAGATCAATAGGGAGAAGGAGCTGACCCTGATCATGTATCACTACATGAGCACAGGGAATTTTCTGCAGAATATGACTGTCAATGATCTCCAGGATATGTCATGGCTGATTGAGCATAACCTGAGGGATATCTGCAGGAGGATGGGGGCACTGCAGATTGAGCCTCAGAATGAAGTTCAAATCCAAGGTCAGGGACAAAAACAAGCAGGAGGAGAAGATGATCATAACAATGGCAAGGAAATTATGGAGATGAATATAAGCACATTGCAGAGGCAGCAAAATTTTATGGAACTGATGAATACTGCTGGGGATGAGACACTTCCACCATTTGGAGATGCCAATCTCTATAATGCTTGGCCTAGCCCCTATTACTTCCCAAAAGCATCCTCCAATGGCGATTTCTAA 720 0.4583 MTRRKVKLASIDNESVRKTTFRKRKNGMVKKATELSTLCGVEACMIIYSPYDSEPEIWPSSMGVQGTIVRFRQLPEMEQVKKMMNQMSFTRERIQKISEQVTKMRKINREKELTLIMYHYMSTGNFLQNMTVNDLQDMSWLIEHNLRDICRRMGALQIEPQNEVQIQGQGQKQAGGEDDHNNGKEIMEMNISTLQRQQNFMELMNTAGDETLPPFGDANLYNAWPSPYYFPKASSNGDF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1326 239 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lele28g1326 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Lele28g1326 239 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lele28g1326 239 Coils Coil 80 100 - -
Lele28g1326 239 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Lele28g1326 239 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lele28g1326 239 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Lele28g1326 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele28g1326 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele28g1326 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele28g1326 239 MobiDBLite consensus disorder prediction 164 183 - -
Lele28g1326 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele28g1326 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1326 Lele-ChrLele28 9009780 9010499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1326 1 157 Type I MADS-box Gene Family AT5G48670 49.682 9.06e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele28g1326 SRF-TF 2.1e-18 No_clan