Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1314 ATGTTCCCTGAAGCTCTATCCCTCATGCGATTCTTAGTGTCTTGGAAAGGAAAGGACTCTGCTTCTTTATTGTTTGCGTCTGTTCTTCAAACAAGAGGTACCCACCAATCCAATATTGTATTTGATGTTTTAATTCATGCTTATTTGGATTCTGGATTTGTTGCGGATGCCATTCAATGTTTTCGGTTGGCTAGGACAAATAATATCTTCAAGTCCCACTTCATTCTTGTGTGTGCAGGGGTTCGAGATTTGAAAGAGGCCAGGAAGCTTCTATACGAGATGGGTGCAAATGGATTGAAGCCTGACAATATCACCTTCACTACGCTAATAGATGGATTTTGTAAGGATGGAGATCTTGAAGTGCCCTTGGAGATCAAGGAGAGAATGATTGAAGAAGACGCAATGCTTAATTTGGGGCTAGTTCCAGATGATATCACATTTAGCATTTTGCTAGAAGGTCATTGCAAGCATGGTAGTCCTGAAGAAATTGAGCTATTTAGAAGTGAGAAAGGACTTATTACAGATTATACTTCTTATACTGCACTTCTTAGTGAAGCAAGTAAAGTTTCCAAAGATCGCAGAAAGAGATGA 591 0.3959 MFPEALSLMRFLVSWKGKDSASLLFASVLQTRGTHQSNIVFDVLIHAYLDSGFVADAIQCFRLARTNNIFKSHFILVCAGVRDLKEARKLLYEMGANGLKPDNITFTTLIDGFCKDGDLEVPLEIKERMIEEDAMLNLGLVPDDITFSILLEGHCKHGSPEEIELFRSEKGLITDYTSYTALLSEASKVSKDRRKR 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1314 196 Pfam PPR repeat 139 159 IPR002885 -
Lele28g1314 196 Pfam PPR repeat 97 129 IPR002885 -
Lele28g1314 196 Pfam PPR repeat 40 67 IPR002885 -
Lele28g1314 196 Gene3D Tetratricopeptide repeat domain 134 195 IPR011990 GO:0005515
Lele28g1314 196 Gene3D Tetratricopeptide repeat domain 4 133 IPR011990 GO:0005515
Lele28g1314 196 TIGRFAM PPR: pentatricopeptide repeat domain 104 133 IPR002885 -
Lele28g1314 196 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 102 136 IPR002885 -
Lele28g1314 196 PANTHER ATPASE EXPRESSION PROTEIN 3 19 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1314 Lele-ChrLele28 8902227 8903609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1314 35 188 Glycosyltransferase AT1G05670 28.743 9.32e-13 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g1314 28 8902227 8903609 Lele25g1330 25 9093551 9097052 CCT
Lele28g1314 28 8902227 8903609 Lele26g1340 26 9060684 9069978 CCT
Lele28g1314 28 8902227 8903609 Lele28g1331 28 9049811 9059106 CCT
Lele25g1315 25 8973583 8975394 Lele28g1314 28 8902227 8903609 hybridization
Lele26g1322 26 8913265 8914708 Lele28g1314 28 8902227 8903609 hybridization