Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1308 ATGCCTTATCTCTCACTACTGATATTTCTCTTCCTCTCCACCGCCGTCTCTCGCACTTGTTCCCACTCTCACTCATCCTCTATAGACTCCTTCATCTTCAACGGCTGCACCCAACAGAAGTACTCGCCGGACTCACCTTATACCGCCAACCTCCAAGCCTTACTCACTTCCCTCCTCAGCTCCGCCACCTACTCTTCTTACTCTAACTTCTCCGTCCTCGGCTCCTCCGTCGTCTACGGCCTCTACCAATGCCGTGGCGACCTCTCCATGCCTGACTGCTCCTCCTGCATCTCCCGCTCCCTTGACCGCCTCTCCGCCCTCTGCCCCTCCACCTGCGGAGCTGCCATCCAGCTTGACGGTTGCTTCGTCAAGTATGATAACGCTACCTTCGTCGGTGTTGAGGACAAGACCGTCGTTTTCAAGAAATGTGGACCTTCCGTGGGAAGTGGTAGCAGCGGCAACGATATGGGGAGCACGGATGCGGTTTTGTCTGCGCTGTCGGGTTCCGGTGGATACTTCAGGGTGGTCGGGTCGGGTAATGTGCAGGGTGTGGCTCAGTGCACCGGCGATCTTGCTTTCGATTAG 585 0.5658 MPYLSLLIFLFLSTAVSRTCSHSHSSSIDSFIFNGCTQQKYSPDSPYTANLQALLTSLLSSATYSSYSNFSVLGSSVVYGLYQCRGDLSMPDCSSCISRSLDRLSALCPSTCGAAIQLDGCFVKYDNATFVGVEDKTVVFKKCGPSVGSGSSGNDMGSTDAVLSALSGSGGYFRVVGSGNVQGVAQCTGDLAFD 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1308 194 Pfam Salt stress response/antifungal 36 127 IPR002902 -
Lele28g1308 194 Gene3D - 28 130 IPR038408 -
Lele28g1308 194 FunFam cysteine-rich repeat secretory protein 3 28 130 - -
Lele28g1308 194 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 5 192 - -
Lele28g1308 194 ProSiteProfiles Gnk2-homologous domain profile. 29 130 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1308 Lele-ChrLele28 8838040 8838624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1308 8 193 Pollen Coat Proteome AT4G20670 24.519 5.65e-12 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1311 25 8909451 8910838 Lele28g1308 28 8838040 8838624 CCT
Lele25g1300 25 8797088 8797772 Lele28g1308 28 8838040 8838624 CCT
Lele25g1311 25 8909451 8910838 Lele28g1308 28 8838040 8838624 hybridization
Lele26g1315 26 8864253 8865491 Lele28g1308 28 8838040 8838624 hybridization