Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1302 ATGGGAAGGCAACCTTGCTGTGACAAAGTTGGGTTGAAGAAAGGCCCTTGGACTGCTGATGAAGACAAGAAACTCATCAACTTCATCCTCACCAATGGCCAATGTTGCTGGAGAACTGTCCCTAAGCTTGCAGCGCTATTGAGATGTGGGAAAAGTTGCAGGCTGAGATGGACCAACTACCTCAGACCAGATTTGAAGAGAGGTCTCCTTTCTGAATATGAAGAGAAAATGGTGATTGATCTCCATGCCCAACTTGGCAACAGATGGTCTAAGATTGCGTCTCATCTTCCTGGCAGAACTGATAATGAGATCAAGAACCATTGGAACACACACATCAAGAAGAAGCTCAAGAAAATGGGGATTGATCCTGTCACTCACAAGCCTCTCTCTGATCAACAACAACAAAACCAGAATCCGACACCATCACAGACACGGATTAATCAACTTCAGATACAACAGCAGCAACAACAACAGCAACCTGTGACAACTAGCCTCAAGATTGATCAAAATAATGGAGAACCAGAGACAGAGAAGGCAGACACCTCGTATGAGTCATCATCAACCTTAACTGAATCGAAAGAGGAGGATCATCACAAGATTGATGAAGAAACTCCCCCATTTGAAGACATCATCAACAGTTTCTGCACTGACGAGGTTCCATTGATTGAGCCTGATGAGATTCTTATGCCCTCCTCTGGTCCGACCGCTTCGTCTTCTTCATCGTCTTCATCTTCTTCTTCTTCTACTTCTAATTCTTCCAACATCCTCGGAGACCTGGAGCTGCTGGAATTCGAGTGGGCTTGTAATTACAGTGACAATAACGACAGCAACAACAACAATAATAACAGTATGGGATTGTGGGATGGTGATGATTTTATGAGCTGTTGGGATTTGCTTTTGAATGATGATGACGATGTTGACAGGAAGATGGCAGATTTTGATTCTGCTCTGAAACAAGGTCCAAGAATGGTCATGGATCAAGAATCTTGGGCATATGGGTTGTTTTGA 1008 0.4375 MGRQPCCDKVGLKKGPWTADEDKKLINFILTNGQCCWRTVPKLAALLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLSDQQQQNQNPTPSQTRINQLQIQQQQQQQQPVTTSLKIDQNNGEPETEKADTSYESSSTLTESKEEDHHKIDEETPPFEDIINSFCTDEVPLIEPDEILMPSSGPTASSSSSSSSSSSSTSNSSNILGDLELLEFEWACNYSDNNDSNNNNNNSMGLWDGDDFMSCWDLLLNDDDDVDRKMADFDSALKQGPRMVMDQESWAYGLF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1302 335 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele28g1302 335 MobiDBLite consensus disorder prediction 123 207 - -
Lele28g1302 335 FunFam MYB-related transcription factor 70 130 - -
Lele28g1302 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele28g1302 335 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele28g1302 335 MobiDBLite consensus disorder prediction 127 170 - -
Lele28g1302 335 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele28g1302 335 MobiDBLite consensus disorder prediction 189 206 - -
Lele28g1302 335 PANTHER F14D16.11-RELATED 1 279 - -
Lele28g1302 335 MobiDBLite consensus disorder prediction 231 252 - -
Lele28g1302 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele28g1302 335 CDD SANT 74 112 IPR001005 -
Lele28g1302 335 Gene3D - 70 166 - -
Lele28g1302 335 Gene3D - 11 67 - -
Lele28g1302 335 SMART sant 66 114 IPR001005 -
Lele28g1302 335 SMART sant 13 63 IPR001005 -
Lele28g1302 335 MobiDBLite consensus disorder prediction 226 252 - -
Lele28g1302 335 CDD SANT 16 61 IPR001005 -
Lele28g1302 335 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele28g1302 335 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Lele28g1302 335 FunFam MYB transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1302 Lele-ChrLele28 8771369 8772689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1302 1 335 MYB Transcription Factor Family AT5G16600 46.429 1.67e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele28g1302 Myb_DNA-binding 7.1e-11 CL0123