Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1298 ATGGCTACTTCCTTGGATATGTCACTTGATGATAGGATAAAAACCAGAAGTAACAGGGAGAGGGGTAGAGGGCGTGGCAGAGCCCCACGTGGCCGTGGAGCAGGTCATAATCTTGGCGGTGGAAGAATGCCTGGTGCAGCTCGTAGAGCTCCTCTTGGAATTAATTCTCGGTCATCTGCTTATGCCATTGCCAAGTCCATTCGCAGAACCAGGCGTTTTCCATGGCAGCATGATTTATTTGAAGATAGCCTAAAAGCTGCAGGGATACAAGGAGTAGAAGTAGGCACAAAGTTGTATGTTTCCAACTTGGACCAGGGAGTAACCAACGAAGATATAAGGGAACTTTTCGCAGAGATTGGAGGCTTGAAGCGCTATGCAGTTCACTATGACAGAAATGGACGTCCTAGTGGTTCAGCTGAAGTTGCCTATACTAGAAGGAGTGATGCATTTGCAGCTCTTAAACGATACAATAATGTACTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTGCAAATGCAGAATTGCCTGTATCCGCTCGTGTGAACGTTTCTGGGATAAATGGGCAGAGGAAGAGGACAGTTGTCATGACGCCTGGAGGTCGACCTGGAGGTAGAGGTGGGGGTCCTGCTATGTTTAATCGTGGTCCAGGTTGGGGACGGCGTGGTGGTGGAAGGAGTGGTGGTGGGGTTATGCGTGGTGGAGGCGGTGGACGAGCTAGGGGTCGGGGCCGCATTGGTCGGGGTCGAGGGCGTGTGAAGAAAGATGCAGTTGAGAAGTCTGCAGATGATCTTGACAAGGAACTAGAAACTTATCATGCTGAGGCCATGCACATCTCATGA 846 0.4976 MATSLDMSLDDRIKTRSNRERGRGRGRAPRGRGAGHNLGGGRMPGAARRAPLGINSRSSAYAIAKSIRRTRRFPWQHDLFEDSLKAAGIQGVEVGTKLYVSNLDQGVTNEDIRELFAEIGGLKRYAVHYDRNGRPSGSAEVAYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANAELPVSARVNVSGINGQRKRTVVMTPGGRPGGRGGGPAMFNRGPGWGRRGGGRSGGGVMRGGGGGRARGRGRIGRGRGRVKKDAVEKSADDLDKELETYHAEAMHIS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1298 281 SUPERFAMILY RNA-binding domain, RBD 20 170 IPR035979 GO:0003676
Lele28g1298 281 MobiDBLite consensus disorder prediction 200 265 - -
Lele28g1298 281 MobiDBLite consensus disorder prediction 1 50 - -
Lele28g1298 281 Pfam C-terminal duplication domain of Friend of PRMT1 221 275 IPR025715 -
Lele28g1298 281 SMART rrm1_1 97 169 IPR000504 GO:0003723
Lele28g1298 281 Gene3D - 91 172 IPR012677 -
Lele28g1298 281 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 279 - -
Lele28g1298 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Lele28g1298 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
Lele28g1298 281 SMART FoP_duplication_2 205 281 IPR025715 -
Lele28g1298 281 MobiDBLite consensus disorder prediction 9 24 - -
Lele28g1298 281 CDD RRM_THOC4 96 170 - -
Lele28g1298 281 Coils Coil 256 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1298 Lele-ChrLele28 8736992 8739835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1298 61 233 Eukaryotic Initiation Factors Gene Family AT1G49760 29.101 1.57e-11 62.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g1298 28 8736992 8739835 Lele25g1300 25 8797088 8797772 CCT
Lele28g1298 28 8736992 8739835 Lele26g1305 26 8763291 8772876 CCT
Lele28g1298 28 8736992 8739835 Lele27g0789 27 15984430 15985114 CCT
Lele28g1298 28 8736992 8739835 Lele28g1295 28 8722835 8723517 CCT
Lele25g1302 25 8807578 8809649 Lele28g1298 28 8736992 8739835 hybridization
Lele26g1306 26 8772907 8775752 Lele28g1298 28 8736992 8739835 hybridization