Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1295 ATGGCGACTGAACCTCCTTCGCTTCCTTCTTACCCAGAGATGATAATGAAGGCTCTGGAGGCTCTGAACGAACCGACTGGTTCAAACAAATCGTCGATCGCGAAGCACATAGAAGATACCTACGGCGAGTTACCGGCGAGTCACTCGACGTTGCTTTCTGACCATCTGAGCAGGATGAAAGAGAGTGGAGAGCTAGTGCTGGCGAAGAACAACTACATGAAACCCGATCCGAATGCCCCACCCAAACGAGGTCGGGGCAGGCCACCCAAGCCCAAGGCACCTCTACCTCCGGGTACCGTACTTTCCCCACCAAGGCCCAGAGGCCGCCCACCCAAGGACCCAAATGTCTCTCCCAAGCCCAAAACCTCAACCGGCAGTGGCAGGCCCAGAGGGAGGCCCAAGAAGGTGGCCAGGACTTCAGTGGAGAGTGGGCCAGTTGTGAGCCGGGGCAGAGGCCGGCCTCCAAAGGAGAAGCCCACACTGACTGAAGTGAGCGTTGAACAATAG 507 0.574 MATEPPSLPSYPEMIMKALEALNEPTGSNKSSIAKHIEDTYGELPASHSTLLSDHLSRMKESGELVLAKNNYMKPDPNAPPKRGRGRPPKPKAPLPPGTVLSPPRPRGRPPKDPNVSPKPKTSTGSGRPRGRPKKVARTSVESGPVVSRGRGRPPKEKPTLTEVSVEQ 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1295 168 MobiDBLite consensus disorder prediction 62 168 - -
Lele28g1295 168 MobiDBLite consensus disorder prediction 90 117 - -
Lele28g1295 168 PRINTS High mobility group protein (HMGY) signature 80 92 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lele28g1295 168 PRINTS High mobility group protein (HMGY) signature 106 117 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lele28g1295 168 PRINTS High mobility group protein (HMGY) signature 95 106 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lele28g1295 168 SMART h15plus2 5 71 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele28g1295 168 SMART AT_hook_2 82 94 IPR017956 GO:0003677
Lele28g1295 168 SMART AT_hook_2 148 160 IPR017956 GO:0003677
Lele28g1295 168 SMART AT_hook_2 127 139 IPR017956 GO:0003677
Lele28g1295 168 SMART AT_hook_2 104 116 IPR017956 GO:0003677
Lele28g1295 168 Gene3D - 3 87 IPR036388 -
Lele28g1295 168 Pfam AT hook motif 104 114 IPR017956 GO:0003677
Lele28g1295 168 Pfam AT hook motif 149 158 IPR017956 GO:0003677
Lele28g1295 168 Pfam AT hook motif 127 137 IPR017956 GO:0003677
Lele28g1295 168 Pfam AT hook motif 82 90 IPR017956 GO:0003677
Lele28g1295 168 PRINTS AT-hook-like domain signature 102 113 IPR017956 GO:0003677
Lele28g1295 168 PRINTS AT-hook-like domain signature 125 135 IPR017956 GO:0003677
Lele28g1295 168 PRINTS AT-hook-like domain signature 82 92 IPR017956 GO:0003677
Lele28g1295 168 FunFam HMG-Y-related protein A 4 86 - -
Lele28g1295 168 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 7 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele28g1295 168 PANTHER HISTONE H1 7 159 - -
Lele28g1295 168 Pfam linker histone H1 and H5 family 9 70 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele28g1295 168 MobiDBLite consensus disorder prediction 151 168 - -
Lele28g1295 168 SUPERFAMILY "Winged helix" DNA-binding domain 4 83 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1295 Lele-ChrLele28 8722835 8723517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1295 14 76 Single Myb Histone (SMH) Gene Family AT1G49950 39.683 7.81e-07 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1306 26 8772907 8775752 Lele28g1295 28 8722835 8723517 CCT
Lele27g0786 27 15969544 15972613 Lele28g1295 28 8722835 8723517 CCT
Lele28g1298 28 8736992 8739835 Lele28g1295 28 8722835 8723517 CCT
Lele25g1300 25 8797088 8797772 Lele28g1295 28 8722835 8723517 CCT
Lele25g1269 25 8557567 8560869 Lele28g1295 28 8722835 8723517 CCT
Lele28g1295 28 8722835 8723517 Lele28g1295 28 8722835 8723517 ECH
Lele25g1300 25 8797088 8797772 Lele28g1295 28 8722835 8723517 hybridization
Lele26g1305 26 8763291 8772876 Lele28g1295 28 8722835 8723517 hybridization