Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1286 ATGAAGAGAGATTACCCAGATAACAGTCCTATTGCTGGTGGTTTGAAAGCTGAATGTTCGTCAATGTCAGGTGAGAAGATAAAGATGTGGGAGGATGAACTCGATGCTTCCGGTGGGATGGATGAGTTGCTGGCAGCTTTGGGCTACAAGGTACGGTCATCAGACATGGCGGATGTGGCTCAGAAGCTTGAGAAGCTTGAGATGGTTATGGCCACTTCTCAGGAAGATGGGATATCTCATCTTGCTTCTGACACTGTCCACTATGACCCCACCGATCTCCATGGTTGGGTTCAAAGCATGCTCACGGAGCTCCACGATTCGCCCAATTGTCTCGATCCGTCGGCGCTGTTGGCGAACCAACAAATTGATGACGCTACTCTAGCTCCGGCCAGATCCTCCGTTATATCCACCGGAAATTTCTCCAATTCTCAGCCGCAGATCGAGAATCTGTCAACCGTGTACCATGATGATTCCGAGTACGACCTCCGAGCAATTCCGGGCAAGGCGGCGTTCCCACAAAACAAAACGTCAGATAGTGAAAATAGCCATAAGCGATTGAAAACTTCTCCTTCAAACGAATCCGCTCCGTTGCCGTCGCCGGCGACTGTACCAGAGCACGCGCGTCCGGTGGTTCTCGTTGACTCCCAAGAAAACGGGGTGCGCCTCGTGCACGCGCTGATGGCATGTGCGGAGGCGGTTCAGCAGAACAATTTGAAGCTGGCAGAAGCACTTGTGGAGCACGTGAGCAGGCTGGCGGCGTCTCAAGCCGGAGCAATGAGGAAGGTGGCTTCCTGCTTCGCTCAAGCTTTAGTTCACCGGATTTACGGAATCTCACAACCATCCATCGATTCCGCCTTCTCCGATATGCTCTATATGCATTTCTATGAATCCTGCCCTTACCTGAAATTCGCCCATTTCACGGCGAACCAAGCCATCCTTGAAGCCTTCGCCACCGCGGATAGAGTTCACGTCATCGATTTTGGGCTCAAGCAGGGGATGCAATGGCCGGCATTAATGCAAGCCCTTGCCTTACGACCCGGTGGTCCTCCGACGTTCCGCCTCACCGGAATCGGACCTCCGCAACCGGACAACACCGATGCTCTTCAACAAGTGGGATGGAAATTGGCGCAATTGGCCAAAACAATCGGAGTCCAATTCGAATTCCGCGGGTTCGTCTGCAACAGCTTGGTGGATCTCGAGCCGTCTCTCATCGAGATCCGACCCGGAGAAGCAGTTGCGGTTAACTCCGTTTTCGAACTCCACGAGCTCCTGGCCCGACCCGGCGCCATCGACAAGGTCTTGAACACGATCAAGGCCATGAATCCGACGATCGTGACTGTGGTGGAGCAAGAAGCGAACCACAACGAGCCGGTTTTCTTGGACCGTTTCACAGAAGCGCTACACTACTACTCAACCATGTTCGACTCACTGGAGGGCTCGTCATCCTCGTCGGGGTTATTGCCGGCGGCAAGTCAGGACGTGCTGATGTCGGAGCTGTACCTCGGAAGACAGATATGCAACGTGGTGGCGTGCAAAGGGTCAGAGCGAGTGGAGAGGCACGAGACACTGAGTCAGTGGAGGGGTAGGATGGGATCGGCCGGGTTCGAACCGGTTCACCTGGGTTCGAACGCGTTCAAGCAAGCCAGCATGTTATTGCAAGTGTTCGCCGGAGGAGATGGGTACAGGGTGGAAGAGAACAATGGGTGTCTTCTGCTAGGGTGGCACACTCGGCCCCTCATAGCCACGTCGGCTTGGAAAATTCCGGCCGGCGAAGTTTAG 1779 0.5436 MKRDYPDNSPIAGGLKAECSSMSGEKIKMWEDELDASGGMDELLAALGYKVRSSDMADVAQKLEKLEMVMATSQEDGISHLASDTVHYDPTDLHGWVQSMLTELHDSPNCLDPSALLANQQIDDATLAPARSSVISTGNFSNSQPQIENLSTVYHDDSEYDLRAIPGKAAFPQNKTSDSENSHKRLKTSPSNESAPLPSPATVPEHARPVVLVDSQENGVRLVHALMACAEAVQQNNLKLAEALVEHVSRLAASQAGAMRKVASCFAQALVHRIYGISQPSIDSAFSDMLYMHFYESCPYLKFAHFTANQAILEAFATADRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAKTIGVQFEFRGFVCNSLVDLEPSLIEIRPGEAVAVNSVFELHELLARPGAIDKVLNTIKAMNPTIVTVVEQEANHNEPVFLDRFTEALHYYSTMFDSLEGSSSSSGLLPAASQDVLMSELYLGRQICNVVACKGSERVERHETLSQWRGRMGSAGFEPVHLGSNAFKQASMLLQVFAGGDGYRVEENNGCLLLGWHTRPLIATSAWKIPAGEV 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1286 592 Pfam GRAS domain family 222 586 IPR005202 -
Lele28g1286 592 Coils Coil 56 76 - -
Lele28g1286 592 Gene3D - 39 104 IPR038088 -
Lele28g1286 592 Pfam Transcriptional regulator DELLA protein N terminal 41 108 IPR021914 -
Lele28g1286 592 MobiDBLite consensus disorder prediction 166 203 - -
Lele28g1286 592 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 181 582 IPR005202 -
Lele28g1286 592 SMART DELLA_2 41 114 - -
Lele28g1286 592 FunFam DELLA protein GAI 39 104 - -
Lele28g1286 592 ProSiteProfiles GRAS family profile. 213 586 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1286 Lele-ChrLele28 8625373 8627151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1286 25 587 GRAS Transcription Factor Family AT2G01570 59.631 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele28g1286 GRAS 3.9e-138 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1296 26 8608679 8613008 Lele28g1286 28 8625373 8627151 CCT
Lele27g0799 27 16054234 16058880 Lele28g1286 28 8625373 8627151 CCT
Lele28g1287 28 8647154 8655466 Lele28g1286 28 8625373 8627151 CCT
Lele25g1286 25 8689563 8691365 Lele28g1286 28 8625373 8627151 CCT
Lele26g1281 26 8462443 8463664 Lele28g1286 28 8625373 8627151 CCT
Lele27g0815 27 16196886 16198146 Lele28g1286 28 8625373 8627151 CCT
Lele28g1273 28 8502357 8503565 Lele28g1286 28 8625373 8627151 CCT
Lele28g1286 28 8625373 8627151 Lele28g1286 28 8625373 8627151 ECH
Lele25g1286 25 8689563 8691365 Lele28g1286 28 8625373 8627151 hybridization
Lele26g1295 26 8586761 8588554 Lele28g1286 28 8625373 8627151 hybridization