Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1284 ATGGCGGACGTAATGGTAATGAATGAGATTGATGCAAAAGCTTTAGGGCTTGGAGTCGATCTTTCCACCATTGACCTGGATTCCATCCGTCTTCCGCCAGGCGATGATTTTGGTATCGTCAGTGATGATGAAGATATCTACCAGGAGGAAAATCTGGAGTTGGATTCTGGATTTGGCAACATTATAGTTGTGGATAACCTCCCAGTTGTGCCCCGGGAGAAGTTTGAGAAGCTTGAAGGTGTGATACGTAAAATTTTTAGTCAGATTGGAGTGATCAAAGAGGATGATGGCCTATTTATGCCTGTTGATCCTGGTTCCGAGAAAAGTTTAGGTTATTGCTTCATTGAGTACAATACTCCTCAGGAAGCTGAGCTTGCCAAAGAAAAGACACATGGATACAAGTTGGATCGTGCACACGTTTTTTCAGTGAGCATGTTTGATGAGTTTGACCGGTTTATGAAAGTTCCAGATCAGTGGGCTCCTCCTGAAACAAAGCCATATGCTCCAGGAGAAAACCTTCAGCATTGGCTTACTGATGCAAAAGCCCGAGACCAGTTTGTGATTCGTGCTAGTTCTGATACTGAGGTTTTATGGAATGATGCAAGGCATTTGAAGCCTGATCCTGTTTACAAGCGTGCATTTTGGACTGAGAGTTTCGTTCAATGGTCCCCACTTGGTACATATTTGGCAACAGTTCACAGGCAGGGGGCAGCTGTTTGGGGAGGGGCTACAAACTTCAATCGCCTTATGCGATATGCTCATCCACAGGTAAAACTCATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACTTATAGTAGTCATGAACCAAGCAATCCTCGTGATGCTAATAGGGTTGTGATAAATATATTTGATGTGAGGCTTGGTAAAGTGATGAGGGATTTCAAAGGAAGTGCAGATGATTTTGCCGTTGGAGGTACTGGGGGTGTTGCAGGGGTGTCATGGCCTGTTTTCAGATGGGGTGGTGGTAGAGATGATAAGTACTTTGCTAGGATGGGGAAAAATATGATCTCTGTATATGAGACAGAGACATTTTCCCTTATTGACAAGAAGTCCTTGAAGGTTGAAAATGTAATGGATTTCTGCTGGTCTCCAACAGATCCTATTCTCGCACTTTTTGTTCCTGAAATGGGTGGTGGAAACCAGCCTGCTAGGGTTAGTCTTGTTCAAATCCCCGGTAAAGAGGAACTCAGGCAGAAGAACCTTTTCAGTGTCAGTGATTGCAAGATGTACTGGCAAAGCAATGGGGACTACCTTGCTGTTAAGGTAGATCGGTATACAAAGACCAAAAAAAGCACGTACACAGGCTTTGAGCTTTTCCGTATAAAAGAACGTGATATACCCATTGAAGTTCTGGAGCTTGAGAATAAAAATGACAAGATTATTGCTTTCTCTTGGGAGCCCAAAGGTCATAGGTTTGCAGTTATTCATGGTGATAACCCTAAGCCTGATATTAGCTTTTACACCATGCGGACTGCTCAGAACACTGGCCGGGTTTCAAAGCTTGCTACTTTGAAAGGCAAGCAGGCAAATGCTCTGTTTTGGTCACCCGCAGGTCGCTACATTGTGCTTGCAGGGTTGAAAGGCTTCAATGGACAATTGGAGTTTTATAACGTGGATGAGCTTGAAACTATGGCTACTGCTGAACATTTTATGGCAACAGATATTGAATGGGACCCTACAGGAAGGTATGTCGCAACTTCTGTGACTTCGGTCCATGAAATGGAAAATGGTTTCAACATATGGTCTTTCAATGGTAAACTTCTCTATCGTATCTTGAAGGACCACTTCTTCCAGTTCTTATGGCGGCCAAGACCACCATCTTTCTTGAGTCCAGAAAAGGAGGAAGAGATTGCAAGGAACTTGAAGAAGTATAGTAAGAAGTACGAGGCAGAAGACCAAGACGTATCCCTGCTTCTGAGCGAGCAGGAACGTGAGAAGCGTAGACAGTTGAAAGAAGAGTGGGACAAGTGGGTCAATCAATGGAAGCAGCTTCATGAAGAAGAAAAGTCACCCAGGCAAAAGCTCAGAGATGGTGAAGCCAGTGACGAAGAAGAGGAATATGAGGCTAAGGACATTGAAGTTGAAGAAGTGGTGGATGTATCAGAGGAGGTCCTTCCTTTTGAATATGAACAACAGTGA 2163 0.4378 MADVMVMNEIDAKALGLGVDLSTIDLDSIRLPPGDDFGIVSDDEDIYQEENLELDSGFGNIIVVDNLPVVPREKFEKLEGVIRKIFSQIGVIKEDDGLFMPVDPGSEKSLGYCFIEYNTPQEAELAKEKTHGYKLDRAHVFSVSMFDEFDRFMKVPDQWAPPETKPYAPGENLQHWLTDAKARDQFVIRASSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGATNFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRLGKVMRDFKGSADDFAVGGTGGVAGVSWPVFRWGGGRDDKYFARMGKNMISVYETETFSLIDKKSLKVENVMDFCWSPTDPILALFVPEMGGGNQPARVSLVQIPGKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFSWEPKGHRFAVIHGDNPKPDISFYTMRTAQNTGRVSKLATLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFNGKLLYRILKDHFFQFLWRPRPPSFLSPEKEEEIARNLKKYSKKYEAEDQDVSLLLSEQEREKRRQLKEEWDKWVNQWKQLHEEEKSPRQKLRDGEASDEEEEYEAKDIEVEEVVDVSEEVLPFEYEQQ 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1284 720 SMART rrm1_1 61 144 IPR000504 GO:0003723
Lele28g1284 720 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 32 711 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele28g1284 720 SUPERFAMILY DPP6 N-terminal domain-like 219 602 - -
Lele28g1284 720 FunFam Eukaryotic translation initiation factor 3 subunit B 182 383 - -
Lele28g1284 720 PIRSF Transl_init_eIF3b 7 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele28g1284 720 Gene3D - 59 144 IPR012677 -
Lele28g1284 720 FunFam Eukaryotic translation initiation factor 3 subunit B 55 155 - -
Lele28g1284 720 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 148 IPR000504 GO:0003723
Lele28g1284 720 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 49 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele28g1284 720 MobiDBLite consensus disorder prediction 673 699 - -
Lele28g1284 720 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Lele28g1284 720 Gene3D - 178 384 IPR015943 GO:0005515
Lele28g1284 720 Pfam Eukaryotic translation initiation factor eIF2A 407 607 IPR013979 -
Lele28g1284 720 MobiDBLite consensus disorder prediction 673 688 - -
Lele28g1284 720 CDD RRM_eIF3B 59 143 IPR034363 -
Lele28g1284 720 FunFam Eukaryotic translation initiation factor 3 subunit B 412 627 - -
Lele28g1284 720 SUPERFAMILY RNA-binding domain, RBD 58 146 IPR035979 GO:0003676
Lele28g1284 720 Gene3D - 408 623 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1284 Lele-ChrLele28 8602027 8606973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1284 5 713 Eukaryotic Initiation Factors Gene Family AT5G27640 77.042 0.0 1182