Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1280 ATGGAGCACTTGTTGGGTCTGCTCAGAATTCACGTCCAAAGAGGCGTTAATCTCGCTGTTAGAGATGTTGTAAGCAGCGATCCTTACGTTGTCATCAAAATGGGCAAGCAGAAATTGAAGACTCGAGTTGTAAATAAGAATGTCAATCCTGAGTGGAATGATGATTTGACCTTATCTGTTTCAGATCCTCGTCTCCCAGTTCATCTCTATGTGTATGACAAAGACACGTTCAGTTTTGATGACAAAATGGGGGAGGCTGAGTTTGACATTAATCCCTTTCTCGAAGCTGTGAAGATGCGGTTGAACAACCTCCCGGATGGAACTATCATCACGAAAATTTATCCGAACCGACAAAACTGTCTGGCCGAAGAGAGCCAAATTGTGTGGAAAGGTGGAAAAATTGTTCAAAACATGGTTCTTAGGCTGAAAAATGTAGAGTCAGGGGAAGTGGAGCTCCAATTGCATTGGATTGACATTCCTGGTTCCAGGGGTCTGTAG 498 0.4357 MEHLLGLLRIHVQRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVNKNVNPEWNDDLTLSVSDPRLPVHLYVYDKDTFSFDDKMGEAEFDINPFLEAVKMRLNNLPDGTIITKIYPNRQNCLAEESQIVWKGGKIVQNMVLRLKNVESGEVELQLHWIDIPGSRGL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1280 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
Lele28g1280 165 Gene3D C2 domain 4 160 IPR035892 -
Lele28g1280 165 CDD C2_ArfGAP 5 148 - -
Lele28g1280 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Lele28g1280 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Lele28g1280 165 SMART C2_3c 7 102 IPR000008 -
Lele28g1280 165 Pfam C2 domain 6 93 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1280 Lele-ChrLele28 8554688 8556882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1280 38 165 C2H2 Transcription Factor Family AT1G70790 61.538 3.85e-53 164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g1280 28 8554688 8556882 Lele28g1280 28 8554688 8556882 ECH
Lele27g0805 27 16119245 16121350 Lele28g1280 28 8554688 8556882 ECH
Lele50g1676 50 21718180 21721276 Lele28g1280 28 8554688 8556882 ECH
Lele52g1632 52 20117112 20119412 Lele28g1280 28 8554688 8556882 ECH
Lele25g1279 25 8618277 8620385 Lele28g1280 28 8554688 8556882 hybridization
Lele26g1289 26 8519685 8521573 Lele28g1280 28 8554688 8556882 hybridization