Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1279 ATGACCTCGGGAAAAGAGAAGCTGGGTTTTTGCAGGTACCAATGGTTGAAGAAGGCAAGAAGCTTAGCCAAAATTGTCAGCTCAACTGAGTCCAAATTTAATTTAGCAGATAAATCGGGAAGGAAACGAACAGAGTTTCAGCAATCGAAGACTGGAGTGGTGAAGAAGAATGTGAATCCAGAGTTGAATGAAGAGTTGACTTTCCCTCTAGAAAATTCTCCTCTCATGGAGCTCCAATTATCAAGGGAGTACTGGCAGGGTCTGCTCAAAATTCATGTCCAGAGAGGCGTGAGTCTTGCTATTAGAGATTACTTCCGCAATAGCAGCGATCCTTATGTTGTCTCTCAAAATGGGCAAGCAGATGTGAATCCTGAGTGGAATAAAGACTTGACTTTATATATTCTAGATTCTCCTCTCCCGTCCAGCTTAGACACATTCAGTTCTGATGACAAAATGGGGGAGGTTGCGTTTGACATTAATCCAATTGTTGAAGCTGTGAAAATGGGGTTGGCAGGCCTCCCTGATGGAACTGCCATTAGAACGATACATCCGAACCGGCAAAACCGGCTCACCCAAAGCAGCCAAATTGTGTGGGAAGATATGACCGAGTTGTTCAGAACATGATGGTCGTTGATAGCTGGAAGGCTACCAGGAAGAACAGCGAATGACGTGAAGAACTTCTGGCACACCAACATGCGCGATAAGACAGAAGAAAATCAGAGGAAGAAAGCAAAAGATCAGGTGATGAATAATAATATAGAGGAGACGACGGCAGAAGAAGTAGTAAAACAGCACGTAGTGATAAGACCTCATCCTCACACTTTCTCTAAGAATTCGCCATGGCTGAGGAGGAATAAGCTTGTTTCTGCAAGTGACGCTGGTGATGAAACTAATAAAAATATGAATGCATCAGCGGCTAAAACTAGTTCCGCAGAGCCATGTGGTGGTTGTGGTGATTTTATACAGAGAGATCATCATCAACAGTCAAAAGAGTGGTGGGACAGTTTACTGAACAAGGAAGTAGATGAAAGGCAAGTTGGGAATTTCACTATGATGGATTTTTGGGACGACGACGAAGACTTTCTGAAAATGGAAGGTCCAAGTTTGGAAGGCCAGAGTTCTTGGAGTCCCTGTTCGTAG 1140 0.4377 MTSGKEKLGFCRYQWLKKARSLAKIVSSTESKFNLADKSGRKRTEFQQSKTGVVKKNVNPELNEELTFPLENSPLMELQLSREYWQGLLKIHVQRGVSLAIRDYFRNSSDPYVVSQNGQADVNPEWNKDLTLYILDSPLPSSLDTFSSDDKMGEVAFDINPIVEAVKMGLAGLPDGTAIRTIHPNRQNRLTQSSQIVWEDMTELFRTXWSLIAGRLPGRTANDVKNFWHTNMRDKTEENQRKKAKDQVMNNNIEETTAEEVVKQHVVIRPHPHTFSKNSPWLRRNKLVSASDAGDETNKNMNASAAKTSSAEPCGGCGDFIQRDHHQQSKEWWDSLLNKEVDERQVGNFTMMDFWDDDEDFLKMEGPSLEGQSSWSPCS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1279 379 Gene3D C2 domain 69 169 IPR035892 -
Lele28g1279 379 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 87 201 IPR044562 -
Lele28g1279 379 Gene3D - 189 262 - -
Lele28g1279 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 236 IPR017930 -
Lele28g1279 379 CDD SANT 209 232 IPR001005 -
Lele28g1279 379 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 73 164 IPR035892 -
Lele28g1279 379 SUPERFAMILY Homeodomain-like 201 240 IPR009057 -
Lele28g1279 379 Pfam C2 domain 88 159 IPR000008 -
Lele28g1279 379 Pfam C2 domain 47 78 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1279 Lele-ChrLele28 8546673 8552724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1279 121 198 C2H2 Transcription Factor Family AT1G70790 44.706 1.30e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele28g1279 C2 0.87 CL0154