LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele28g1273	ATGGAGCTTGAGTACCACAAGTCTGTGCTTGAGGAAGAAGATGAGTTCAGCAAAGATTCTGTCATAACCCATATTCCTGAGGAAGCAAAGTCTCTCATCAACTTCAAAGCCATTAATAATGGTGGTGAATCGTTTTTGCTTAGCTTTCAGCAGAAAGATTACTGTTTGTGGGACAATAATAATGATGGTTTGGATCATTATCAGAATTCAGACCCAAGACTTATTCAGGATTTTAACTGCATTCAAACTGCAAGTAGCCACCACTATGGAGGATCAAAAGAGCAGCAGCAAGGTGAGAGTAGTTCATATGGTGGGTGGCTATATTCTGAACCAAATGTTCCTTCTGATAATAACAGCCTTCAGAATTCTTCACCAAGATCAAAAGAAGCATCCTTCCATCATAAGCGCCTTTCAATGGGAGAGAGCATGCAAGTGTCGAAGAAGCAATGCACTGCTGCAAGCAAAAGTACACCAAAACCAACAAAGGCAAACCCATCTAAGGATTCTCAGAGTATAGCAGCCAAGAACAGAAGAGAGAGAATAAGCGAGCGACTCAAGATACTTCAGGAACTAGTTCCTAATGGCTCCAAGGTACTGGCGACTGATGAATTTTGGCCTGTACAAGGAGGAAAAGCGCCTGATATTTCTCAAGCAAAAGAAGCCATTGATGCCATTCTTTCATCTCAGAGAGACAGAAACTCATCATCAACCTCAAAGCAACATCATTAA	729	0.4143	MELEYHKSVLEEEDEFSKDSVITHIPEEAKSLINFKAINNGGESFLLSFQQKDYCLWDNNNDGLDHYQNSDPRLIQDFNCIQTASSHHYGGSKEQQQGESSSYGGWLYSEPNVPSDNNSLQNSSPRSKEASFHHKRLSMGESMQVSKKQCTAASKSTPKPTKANPSKDSQSIAAKNRRERISERLKILQELVPNGSKVLATDEFWPVQGGKAPDISQAKEAIDAILSSQRDRNSSSTSKQHH	242

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele28g1273	242	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	166	229	IPR036638	GO:0046983
	Lele28g1273	242	MobiDBLite	consensus disorder prediction	86	176	-	-
	Lele28g1273	242	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	165	228	IPR011598	GO:0046983
	Lele28g1273	242	MobiDBLite	consensus disorder prediction	86	127	-	-
	Lele28g1273	242	PANTHER	TRANSCRIPTION FACTOR BHLH83-RELATED	61	198	-	-
	Lele28g1273	242	MobiDBLite	consensus disorder prediction	142	171	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele28g1273	Lele-ChrLele28	8502357	8503565	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele28g1273	3	235	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT5G37800	39.535	6.90e-40	137

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele26g1282	26	8467930	8469817	Lele28g1273	28	8502357	8503565	CCT
	Lele27g0814	27	16190551	16193916	Lele28g1273	28	8502357	8503565	CCT
	Lele28g1274	28	8506813	8510096	Lele28g1273	28	8502357	8503565	CCT
	Lele25g1268	25	8553519	8554788	Lele28g1273	28	8502357	8503565	CCT
	Lele28g1273	28	8502357	8503565	Lele25g1267	25	8538303	8541322	CCT
	Lele28g1273	28	8502357	8503565	Lele26g1280	26	8443352	8446329	CCT
	Lele28g1273	28	8502357	8503565	Lele27g0816	27	16213426	16216468	CCT
	Lele28g1273	28	8502357	8503565	Lele28g1272	28	8487867	8490878	CCT
	Lele28g1273	28	8502357	8503565	Lele25g1286	25	8689563	8691365	CCT
	Lele28g1273	28	8502357	8503565	Lele26g1295	26	8586761	8588554	CCT
	Lele28g1273	28	8502357	8503565	Lele27g0800	27	16078070	16079872	CCT
	Lele28g1273	28	8502357	8503565	Lele28g1286	28	8625373	8627151	CCT
	Lele28g1273	28	8502357	8503565	Lele28g1273	28	8502357	8503565	ECH
	Lele25g1268	25	8553519	8554788	Lele28g1273	28	8502357	8503565	hybridization
	Lele26g1281	26	8462443	8463664	Lele28g1273	28	8502357	8503565	hybridization