Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1263 ATGGGTTGCGGCTTTAGCGCGAGGATCAAATCTGAAAACCCTTCACTCAAGGCTGTGAATTTGACCCATGATGGCAAAGAAGAGGATGGTTCGATTGGTGGAAGCAACAAGGTCTCCCGATTAAAAAATTTCACATATAATGAGCTAAAAACAGCTACAAGGAACTTTCATCCAGACAATATGGTGGGCGAAGGTGGGTTTGGTCGTGTGTTTAAGGGGTGGCTTGATGAGCAGACACTTGCACCTGCTAAACCAGGCACTGGGATTGCAATTGCTGTGAAGAAGCCTAACCAAGATGGCTTCCAAGGGCACAAAGAGTGGTTGACAGAGATCAACATTCTGGGACAGCTGCATCATCCTAATCTTGTGAAATTGATTGGTTACTGCTCAGAGGATGAGCACCAGCTTTTGGTATATGAGTTTTTGCCCAAAGGCAGCTTGGATAATTATTTATTTCTAAGGACTTCTCATGTTGAACCTCTTTCTTGGAGCAACCGTATGAAAATTGCCCTTGATGCTGCCAAGGTTCTGGCATTTCTTCACAGTGATGAAGTAAATGTGATATATCGTGATTTAAAAGCTGCTGATATCTTGCTTGATTCAAACTTCAATGCAAAGCTATCCGATTTTGGTTTGGCAAGGGCCGGGCCATTGGGTGATGAGAGCCATGTCTCTACAAGGGTTATGGGAACCTTTGGCTATGCTGCTCCTGAGTATATAGCCACAGGTCACCTGACAAAAAAGAGTGATGTATACACTTTCGGGGTCGTTCTGCTCGAAATTATGTCAGGCAAGCGCGTACTGGACAGAAACAGGACAGCCAGTGAACATAATTTAGTGGAATGGGCCAAGCCGTACCTTTCGAGTAAGCGCCAGATTTTCAAAGTTATGGATGCTCGTATCGAAGGCCAGTACCCGGTACCTGAAGCCATGAAAGTGGCAAAAATCGCGATTCAATGCCTGTCTGCAGATCCCCAGTTGAGACTGACCATGGCTGATGTGGTAAGGGCATTGAAACAGCTTCAGGATTCCAGAGATACAGAGACTTCTCGGGAACCCTGTCCTGATCGTATTCTTGATGACATCAGCGACGCTTTTGGCATGGGAGCCGTCGGTGGCTACGCCTTTTACTTTCTCAAAGGATTTTATGGAGCTTGTGCTGCTCTTCTGCTCTTTCTCTTTGCCTTTGCTTCTCAATGCAATGCAAAGCATCACTCAACGGCCACATTGGTTGTAAATTCTGAATCTGGATGGCGAATTTCTGAACACTTTTTTGGAGTATTTTTCGAGGAGATTAATCATGCTGGATCTGGAGGATTATGGTCAGAACTTATAAGGAATAGAGGTTTTGAAGCTGGAGGCACAACAGTTCCTTCGAGTATTTCTCCTTGGTCAATCGTTGGAAATGAATCAACTATTCGTGTAGAAACGAAACTTGCCTCTCCCTTTCCCCGTAATAAAGTTGCTGTGAGACTCGATATCCTTTGTGAATCTCCTAAGGATTGCCCACATGGTGTTGGCCTCTCTAACCCTGGTTTTTGGGGCATGTTTATTGAAGAAGGGAAGAAGTACAAAGTGGTCTTCTATGTTAGAGCATTAGGACCAATTGATTTGAAAATCTCATTTAAAGGAAAACTTGGCCAAGAGCTAGCTTCTACTAATATCAGGGCATCTGCAAATGATGTTTCAAAGTGGAAAAAGATGGAAACTATTCTTGAAGCCATTGGATCAGATTTTAATTCTAGTCTGCAGATTACAACCACTAAAAAAGGAGTGATTTGGTTGGATCAAGTTTCAGCTATGCCCACTGAAACTCATAATGGACATGGTTTTCGTAAGGACTTGTATCAAATGGTGGCAGATTTGAAACCAAAATTTATTCGATTTCCAGGCGGTACCTTTGTTGAAGGATGGAAATTGAGAAATGCATTCAGGTGGAAAGAAACCATTGGATCTTGGGAGAATAGACCTGGTCACTTTAACGATGCTTGGGACTATTGGACTGATGATGGTTTAGGTTTTCTAGAGATGCTTCAACTCGCAGAAGATCTTGATACACTACCAGTATGGGTATTTAATGCTGGAATTGCTCGTCAGGAAGAAGTCAATACAACTGAGATTGGTCCTTTTGTGCAAGAAGCTCTTGATGGTATAGAATTTGCTAAAGGTCCAGTCACATCTAAGTGGGGCAAGATGAGAGCTTCTTTGGGACATCCTAAACCATTTGATCTACGATATGTCGCTATTGGAAATGAGGACTGTGACATGTATAATTATCAAGGGAATTATCTTAAATTCTATAAAGCCATCAAGCATCACTATCCAGATATGCGAATAATTTCAAATTGTGATGCTACTGTAAAACCATTGGATCACCCAGCGGATCTGTTTGACTTTCATATATATACAACAGCTGAGGATATTTTCTCAAAGTACAACAAGTTTGATTCTGTAAGACGTATTGGCGCCAAGGCTTTTGTGAGTGAGTACGCTGTATGGAAAGAAGATGCCGGATTTGGATCCCTCTTATCTGCCTTAGGAGAAGCAGCATTTCTAATGGGATTAGAGAGGAACAGTGATCTGGTGGAAATGGTCTCTTATGCGCCACTTTTTGTAAATTATAATGACCAAAAATGGAAACCAGATGCAATCGTGTTTGATTCATATCGGAGCTATGGAATTCCTAGTTATTACTTGCAACAGCTATTCACACAATCAAGTGGAGCAACATATGTAAACTCAAAACTCGAAGCCCCATCTTCCATTGTCGCATCAGCTATTATTTGGCAAGACAAGGCACGCAACAGGAGCTACTTGAGAATTAAGGTTGTGAATTTTGCTAACAGAGAAACCACTCTTGCTATTAAAATTGATGGCTTGAACCCCAATTTGGATCTCTCTGGCTCCACACTTACAGTTCTTACTTCTGGCAATGCCAGAGACGAGAATAGCTTTTACAATCCTGTTAAGGTTGTACCATTGAAAACTCCATTGGAGAATGCTCGGCCTAGCATGAACATCACACTCCCTCCAATTTCAGTGGTATCAATTGACTTCCCAAAATGA 3066 0.422 MGCGFSARIKSENPSLKAVNLTHDGKEEDGSIGGSNKVSRLKNFTYNELKTATRNFHPDNMVGEGGFGRVFKGWLDEQTLAPAKPGTGIAIAVKKPNQDGFQGHKEWLTEINILGQLHHPNLVKLIGYCSEDEHQLLVYEFLPKGSLDNYLFLRTSHVEPLSWSNRMKIALDAAKVLAFLHSDEVNVIYRDLKAADILLDSNFNAKLSDFGLARAGPLGDESHVSTRVMGTFGYAAPEYIATGHLTKKSDVYTFGVVLLEIMSGKRVLDRNRTASEHNLVEWAKPYLSSKRQIFKVMDARIEGQYPVPEAMKVAKIAIQCLSADPQLRLTMADVVRALKQLQDSRDTETSREPCPDRILDDISDAFGMGAVGGYAFYFLKGFYGACAALLLFLFAFASQCNAKHHSTATLVVNSESGWRISEHFFGVFFEEINHAGSGGLWSELIRNRGFEAGGTTVPSSISPWSIVGNESTIRVETKLASPFPRNKVAVRLDILCESPKDCPHGVGLSNPGFWGMFIEEGKKYKVVFYVRALGPIDLKISFKGKLGQELASTNIRASANDVSKWKKMETILEAIGSDFNSSLQITTTKKGVIWLDQVSAMPTETHNGHGFRKDLYQMVADLKPKFIRFPGGTFVEGWKLRNAFRWKETIGSWENRPGHFNDAWDYWTDDGLGFLEMLQLAEDLDTLPVWVFNAGIARQEEVNTTEIGPFVQEALDGIEFAKGPVTSKWGKMRASLGHPKPFDLRYVAIGNEDCDMYNYQGNYLKFYKAIKHHYPDMRIISNCDATVKPLDHPADLFDFHIYTTAEDIFSKYNKFDSVRRIGAKAFVSEYAVWKEDAGFGSLLSALGEAAFLMGLERNSDLVEMVSYAPLFVNYNDQKWKPDAIVFDSYRSYGIPSYYLQQLFTQSSGATYVNSKLEAPSSIVASAIIWQDKARNRSYLRIKVVNFANRETTLAIKIDGLNPNLDLSGSTLTVLTSGNARDENSFYNPVKVVPLKTPLENARPSMNITLPPISVVSIDFPK 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1263 1021 Gene3D Glycosidases 587 903 - -
Lele28g1263 1021 SUPERFAMILY (Trans)glycosidases 581 910 IPR017853 -
Lele28g1263 1021 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 142 352 - -
Lele28g1263 1021 Gene3D Phosphorylase Kinase; domain 1 33 141 - -
Lele28g1263 1021 Pfam Alpha-L-arabinofuranosidase C-terminal domain 829 1013 IPR010720 GO:0046373|GO:0046556
Lele28g1263 1021 Pfam Protein tyrosine and serine/threonine kinase 60 338 IPR001245 GO:0004672|GO:0006468
Lele28g1263 1021 SMART alpha_l_af_c 828 1013 IPR010720 GO:0046373|GO:0046556
Lele28g1263 1021 CDD STKc_IRAK 62 341 - -
Lele28g1263 1021 ProSitePatterns Protein kinases ATP-binding region signature. 62 95 IPR017441 GO:0005524
Lele28g1263 1021 Gene3D Transferase(Phosphotransferase) domain 1 142 360 - -
Lele28g1263 1021 ProSiteProfiles Protein kinase domain profile. 56 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1263 1021 Gene3D - 904 1019 IPR013780 -
Lele28g1263 1021 FunFam Serine/threonine-protein kinase BIK1 24 141 - -
Lele28g1263 1021 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 389 1019 - -
Lele28g1263 1021 SUPERFAMILY Protein kinase-like (PK-like) 38 337 IPR011009 -
Lele28g1263 1021 FunFam Alpha-L-arabinofuranosidase 1 598 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1263 Lele-ChrLele28 8407145 8420857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1263 398 1021 Glycoside Hydrolase AT3G10740 59.076 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele28g1263 PK_Tyr_Ser-Thr 1.2e-45 CL0016