Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1262 ATGCGGAGATACGGTCCAGGATACTACAGTCCTCCTAGGAGAGGATACGGTGGCGGTGGCGGTGGTGGTGGCGGGAGAAGCCCACCTAGGAGGGGATACGGTGGAGGCAGACGCAGGGAACAAAATCATGGGAGCCTTTTGGTTCGGAACATTCCTCTCGATTGCCGACCTGAGGAACTTCGAGTTCCATTCGAGCGATTTGGACCTGTCCGGGATGTCTACCTACCGAAGGACTATTACACTGGAGAACCTCGTGGATTTGCATTTGTGCAATTTGTGGATCCTTATGATGCTTCAGAGGCACAGTATCATATGAATGGACAGATTTTTGCTGGAAGGGAAATATCTGTAGTTCTTGCTGCAGAGTCAAGGAAAAGACCAGAGGAGATGCGTCAGAAGTCAAGGATAAGGTATTTCTTCTGCTTTCTATTTGATGCCTTGCTCTCCTGA 450 0.4978 MRRYGPGYYSPPRRGYGGGGGGGGGRSPPRRGYGGGRRREQNHGSLLVRNIPLDCRPEELRVPFERFGPVRDVYLPKDYYTGEPRGFAFVQFVDPYDASEAQYHMNGQIFAGREISVVLAAESRKRPEEMRQKSRIRYFFCFLFDALLS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1262 149 SUPERFAMILY RNA-binding domain, RBD 6 120 IPR035979 GO:0003676
Lele28g1262 149 Gene3D - 38 138 IPR012677 -
Lele28g1262 149 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 122 IPR000504 GO:0003723
Lele28g1262 149 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 22 140 - -
Lele28g1262 149 MobiDBLite consensus disorder prediction 1 43 - -
Lele28g1262 149 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 39 135 - -
Lele28g1262 149 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 115 IPR000504 GO:0003723
Lele28g1262 149 SMART rrm1_1 45 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1262 Lele-ChrLele28 8402102 8404117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1262 20 107 Eukaryotic Initiation Factors Gene Family AT3G11400 36.842 1.08e-09 53.5