Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1258 ATGTTGAGTGTAACGCATCGAATGCACAACTTGCATATGAAGCAAAGGGATTTCATCAGAGTCCCCCATCCTTCTTTTAAACAACTTCTCACTCTCTGCAATCCCCAAGAGCTAGCATTGACCCCAATGGCTCTTCCCACTCTCCTCGCCATTGTTTCCCTGATAGCTTCTCTGACCCTTACTGACGCTAAAATTCCAGGCGTCTACTCCGGCGGAGAGTGGCAGAACGCCCACGCTACTTTCTACGGCGGCAGCGATGCCTCCGGCACCATGGGAGGGGCGTGTGGGTATGGGAACTTGTATAGCCAAGGGTATGGGGTGAACACAGCGGCGCTGAGCACGGCTCTGTTCAACAATGGCTTGAGCTGCGGGGCTTGCTTCGAGATCAAGTGTGGTAGCGACCCACAATGGTGCCATCCCGGCAGCCCGTCGATCTTCATTACGGCCACCAACTTTTGCCCACCTAACTTCGCTCTCCCCAATGATAACGGCGGCTGGTGCAATCCCCCTCGGCCACACTTCGACCTCGCCATGCCCATGTTCCTCAAGATCGCCGAGTACCGCGCCGGCATCGTCCCTGTCTCTTACCGCCGGGTACCTTGCCGGAAAGCCGGAGGGATAAGGTTCACGATAAACGGGTTCAAATACTTCAACCTGGTTCTGATAACGAACGTGGCCGGAGCAGGGGATATCGTGAGGGTGAGCGTCAAGGGGTCGAAAACGGAGTGGATGAGCATGAGCCGGAATTGGGGTCAGAACTGGCAATCCAACGCCGTCCTGGTGGGCCAGGCACTGTCGTTCAGGGTCACCGGCAGCGACCGCCGCACCTCCGCCTCCTGGAACATCGTCCCTTCCAACTGGCAATTCGGCCAGACCTTCACCGGAAAGAACTTCAGGGTCTGA 903 0.5681 MLSVTHRMHNLHMKQRDFIRVPHPSFKQLLTLCNPQELALTPMALPTLLAIVSLIASLTLTDAKIPGVYSGGEWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCGSDPQWCHPGSPSIFITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKAGGIRFTINGFKYFNLVLITNVAGAGDIVRVSVKGSKTEWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSASWNIVPSNWQFGQTFTGKNFRV 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1258 300 Gene3D - 206 298 IPR036749 -
Lele28g1258 300 SUPERFAMILY Barwin-like endoglucanases 73 224 IPR036908 -
Lele28g1258 300 Pfam Lytic transglycolase 109 196 IPR009009 -
Lele28g1258 300 PRINTS Expansin signature 131 142 IPR002963 GO:0009664
Lele28g1258 300 PRINTS Expansin signature 205 217 IPR002963 GO:0009664
Lele28g1258 300 PRINTS Expansin signature 164 181 IPR002963 GO:0009664
Lele28g1258 300 PRINTS Expansin signature 281 297 IPR002963 GO:0009664
Lele28g1258 300 PRINTS Expansin signature 181 194 IPR002963 GO:0009664
Lele28g1258 300 PRINTS Expansin signature 252 273 IPR002963 GO:0009664
Lele28g1258 300 PRINTS Expansin signature 104 118 IPR002963 GO:0009664
Lele28g1258 300 PRINTS Expansin signature 217 238 IPR002963 GO:0009664
Lele28g1258 300 PRINTS Expansin signature 145 155 IPR002963 GO:0009664
Lele28g1258 300 FunFam Expansin 206 298 - -
Lele28g1258 300 SUPERFAMILY PHL pollen allergen 204 295 IPR036749 -
Lele28g1258 300 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 216 295 IPR007117 -
Lele28g1258 300 FunFam Expansin 63 202 - -
Lele28g1258 300 PRINTS Expansin/Lol pI family signature 73 88 IPR007118 GO:0005576
Lele28g1258 300 PRINTS Expansin/Lol pI family signature 113 131 IPR007118 GO:0005576
Lele28g1258 300 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Lele28g1258 300 PRINTS Expansin/Lol pI family signature 281 295 IPR007118 GO:0005576
Lele28g1258 300 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576
Lele28g1258 300 PRINTS Expansin/Lol pI family signature 189 205 IPR007118 GO:0005576
Lele28g1258 300 SMART dpbb_1 109 196 IPR007112 -
Lele28g1258 300 PANTHER EXPANSIN-A15 59 298 IPR002963 GO:0009664
Lele28g1258 300 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 92 206 IPR007112 -
Lele28g1258 300 Pfam Expansin C-terminal domain 207 284 IPR007117 -
Lele28g1258 300 Gene3D - 60 202 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1258 Lele-ChrLele28 8377974 8381412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1258 43 300 Expansin Gene Family AT2G39700 83.721 7.17e-166 459