Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1252 ATGCGCGTTGTGCGATACATTTTCCCGAAAAATTCTGCACCAGATGCAGAAATATTATGGAGGAGTGTGTTCTTTCTGAAAACTCAAGCCAAGGAAGTTGCAATGTTAACTAGTGGAGTCTCAATTCACTTTTCCCAAGCACATAGAGCCATGAGTTTTGTTTTGAGAGGAACAAGAGCAGACATAGAAACCGGATATCCTGGATTTATGCCTGAGAGGCATGCATTGGTATGTGATTTTTCTCCTGCTATTCATGATACTGAACTCTCACCAGATGTCACCAAATTTTCTGGTGTCTTCTTGATGGCTACAATGTTAAGGATGTATGCAACTTGTCAGCAGCTTCAAGCTGAGGCTCATGCCCATACAGCAGCAGGCAGTGGTGGCCTTCTTGGGCACACTGAAGTACGGTTACATATGCAGCCATCAATGGCACTTACCAACCGAGGACGTCTGCAAGGCCTTAGACTTCAGCTTGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCACTGGATTCAGATAATGCTCCACCTGCACCTTCTATGACTGATGAAGAGATAAATGCTCTTCCTGTTCACAAATACAAGGGTTCTGGTCTTCAAAACAGGAAATCCTCAATGCAACAGACCTCATCTTCCACCTTTGCTGAGAAGCAAGATACGTCAAATGCAGCTGGTAGTACAATAGCCTCAGATGATGAGCTGACCTGCAGTGTGTGTTTGGAGCAAGTTAATGTTGGGGATCTACTCCGTAGCTTGCCCTGCTTACATCAGATTAGACTTGTTTGGGAATTCTATGATCTCCATTCACATGCTGAAATTGCGATTCATAATTTGTTCTCCAATTCTATACTTAAACCCGGCGTATGTTTTCTGAAGTTTCATGCCAATTGCATCGACCCATGGCTGCGGCAACAAGGAACATGTCCTGTATGTAAATTCAGAGCAGGATCTACGTGGCATGAAAGTGAACCGAATGAAGTTGATGCTTCAGACATGGTTTGA 1023 0.435 MRVVRYIFPKNSAPDAEILWRSVFFLKTQAKEVAMLTSGVSIHFSQAHRAMSFVLRGTRADIETGYPGFMPERHALVCDFSPAIHDTELSPDVTKFSGVFLMATMLRMYATCQQLQAEAHAHTAAGSGGLLGHTEVRLHMQPSMALTNRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPPAPSMTDEEINALPVHKYKGSGLQNRKSSMQQTSSSTFAEKQDTSNAAGSTIASDDELTCSVCLEQVNVGDLLRSLPCLHQIRLVWEFYDLHSHAEIAIHNLFSNSILKPGVCFLKFHANCIDPWLRQQGTCPVCKFRAGSTWHESEPNEVDASDMV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1252 340 SUPERFAMILY RING/U-box 290 320 - -
Lele28g1252 340 MobiDBLite consensus disorder prediction 205 229 - -
Lele28g1252 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 324 IPR013083 -
Lele28g1252 340 CDD RING-H2_PA-TM-RING 242 319 - -
Lele28g1252 340 PANTHER TARGET OF ERK KINASE MPK-1 299 324 - -
Lele28g1252 340 MobiDBLite consensus disorder prediction 204 229 - -
Lele28g1252 340 SUPERFAMILY RING/U-box 237 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1252 Lele-ChrLele28 8278525 8282229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1252 51 340 C3H Transcription Factor Family AT3G55530 52.885 4.65e-89 266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g0836 27 16416772 16419818 Lele28g1252 28 8278525 8282229 ECH
Lele28g1252 28 8278525 8282229 Lele28g1252 28 8278525 8282229 ECH
Lele25g1246 25 8293914 8300503 Lele28g1252 28 8278525 8282229 hybridization
Lele26g1260 26 8249147 8252341 Lele28g1252 28 8278525 8282229 hybridization