Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1251 ATGGCTACGGGGACATCTTCTTATTGGTGTTACAGATGTAGTCGGTTTGTGAGGGTCCGGCGGCAGGACACGGTTGTGTGTCCCGACTGCGACAGTGGATTCGTGGAGGAGATTGAGCAAATGCCTCGCCCTGCTTCTATCGTGGATTCGCGCCGGCCAAGGTTCCCGGCGGCTTCGATGTACATGATCCGTAGCCACCAACCCAATTCTGGACAGACTCTGCGTCCTGCTTTGAGGAGGGCTCGTCGGACCAGCGGCGGCGATCTTTCTATGGTTAATCCAGTTGTTGTGCTCCGTGGATCCCCTCAGCCGGCGAGTCATGATTCCGGCGGTGGACATGGGCGTGGTTTCGAACTTTATTACCAAGATGGGTCAGGCTCCGGTCTCCAGCCTCTTCCTCCGAACATGTCAGAGATGCTTCTGGGATCTGGAATCGACAGGCTTCTGGAACAACTTTCTCAGATTGAAATGAACGGTATTTCGCGTTTCGAGCCACCTCCGGTTGCTAAAGCCGCCATCGATTCATTGCCGACGGTTGAGATTCATGATAATCATGTTGCGACGGAATCACATTGCGCCGTTTGTATGGAGCTTTTTGATTTGGGCACAACTGTTCGTGAATTGCCTTGCAGGCACATTTACCATTCGGAATGCATCTTGCCGTGGCTTGCGCTCCGGAATACTTGCCCTGTTTGCCGGCAGGAGCTCCCGGCAGACGCGCAGAACGTCAACGGTCCTGGTTCTGGGCATTCTCTCTCTTTGAACGACGATGACAATGTGGGATTGACCATTTGGAGGCTTCCTGGAGGTGGCTTCGCGGTGGGAAGGTTCGCCGGCGGGAGAAGAAGTTCTTCTGAGCGTGAGCTTCCTGTTGTGTACACAGAAATGGACGGTGGTCTGGGAAACGGCGGCGAACCGAGGAGGGTGACTTGGTCGACGACGATGAACAGTAGAGGAAGAGACAGTGGAGGTGGAGGAGGATTCCGCAAAATGTTTCGCAATCTTTTCGGTTGCTTCAATCCTGGAACTCGAACTCAATTATCTGCTTCAACGTCATCTTCTTCTTCTCCTCCTTCTCCAGAACCTCGTACCTTCAGGAGTAATAATACTTCTCGTTCTCGTCCCATCGTGAATAATACCACGACGCGTTACCGAAGAACCTGGTCTCTGGACGGCAATGGCGGAACCAGACCATGGTGA 1200 0.5342 MATGTSSYWCYRCSRFVRVRRQDTVVCPDCDSGFVEEIEQMPRPASIVDSRRPRFPAASMYMIRSHQPNSGQTLRPALRRARRTSGGDLSMVNPVVVLRGSPQPASHDSGGGHGRGFELYYQDGSGSGLQPLPPNMSEMLLGSGIDRLLEQLSQIEMNGISRFEPPPVAKAAIDSLPTVEIHDNHVATESHCAVCMELFDLGTTVRELPCRHIYHSECILPWLALRNTCPVCRQELPADAQNVNGPGSGHSLSLNDDDNVGLTIWRLPGGGFAVGRFAGGRRSSSERELPVVYTEMDGGLGNGGEPRRVTWSTTMNSRGRDSGGGGGFRKMFRNLFGCFNPGTRTQLSASTSSSSSPPSPEPRTFRSNNTSRSRPIVNNTTTRYRRTWSLDGNGGTRPW 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1251 399 Pfam Ring finger domain 191 233 IPR001841 -
Lele28g1251 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 239 IPR013083 -
Lele28g1251 399 SUPERFAMILY RING/U-box 172 239 - -
Lele28g1251 399 CDD RING-H2_RNF126_like 192 233 - -
Lele28g1251 399 MobiDBLite consensus disorder prediction 343 389 - -
Lele28g1251 399 MobiDBLite consensus disorder prediction 343 399 - -
Lele28g1251 399 Pfam Protein of unknown function (DUF1117) 260 363 IPR010543 -
Lele28g1251 399 FunFam E3 ubiquitin-protein ligase RING1-like 154 239 - -
Lele28g1251 399 ProSiteProfiles Zinc finger RING-type profile. 192 233 IPR001841 -
Lele28g1251 399 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Lele28g1251 399 SMART ring_2 192 232 IPR001841 -
Lele28g1251 399 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 88 237 - -
Lele28g1251 399 MobiDBLite consensus disorder prediction 295 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1251 Lele-ChrLele28 8274865 8276064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1251 129 242 C3H Transcription Factor Family AT5G01980 42.105 1.26e-24 103