Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele28g1238 | ATGAGCGTGGCGGTGAAGAAGAAGAAGAAGAAGAAGAACAACAACAACAACAACAACAACAACAACAACATAGTTTCAGAGGCATTTATACGTAGAGAGATAGATAGGCTTCATTCATTTGATCGGTGGTATTCAAAAATGGCGAATCGGTGGTGGGCTGGTAACGTGGCAATGAGACCAAAAGATCCTTTGTCGTCTTCTCCATCACTTCATCTGAGAAACCCAGAAGATGACCATGGTGGGTTGAACCGATTCGGTATCGTACGAGTTCAAGATTTTCTGGAAAACACCAATAACAACACCACTACTCCGACCAATAGCAGCAACAGTAACACTAACGCCAACACAAACAACACCACGCAGAACGCCGACGACGGCGACAGCCGAGATAACGCCCGCGAAGCTGATGATCAAAACCCAGGTAGCTACGACAGCACGGAGCCGGGCGGCAGCAGTGGTCGCCGGCCCCGAGGCCGCCCTGCTGGGTCGAAGAACAAGCCGAAGCCACCGGTTGTTTTAACAAAGGAGAGTCCTAATGCCCTCCGGAGCCATGTGTTGGAAATCTCCAGCGGCAGCGATGTTGCCGAGAGCCTCTCCACCTTCGCGAACCGGCGACACCGTGGGGTGTCGGTGCTGAGCGGAAGTGGCATTGTAACCGATGTCACTCTCCGGCAACCGGCAGCAGCAGCTGGCGTTATCACACTAAATGGAAGGTTCGAGATCCTGTCACTATCCGGGGCATTTTTGCCGGCCCCGTCACCGCCCGGGGCGACCGGGCTAACGGTGTATCTCGCGGGCGGACAAGGGCAGGTTGTCGGTGGAGCTGTGGTGGGATCACTGGTGGCGTCAGGGCCTGTTTTGGTGATTGCAGCAACATTCGCAAATGCCACTTATGATAGATTACCACTGGAACCTGAACCATCTGGGGAAGAAGTTGAAGCGAAAACACAGCAACAACAATCAGGAGTGAATAATTCAGCTTCTTCTGGGCCTCCTTCAACATCTCAAGCTTTGAACGAACAAGTTTCGATGCCATTGTTCAATAATTTGCCGCCAAATTTGATACCAAACAATGATCAAATGCAACAACATGAAGTGTTCTGGGGAACCCCTGCTCGCCATCCTCCTTCTTACTGA | 1137 | 0.5172 | MSVAVKKKKKKKNNNNNNNNNNNIVSEAFIRREIDRLHSFDRWYSKMANRWWAGNVAMRPKDPLSSSPSLHLRNPEDDHGGLNRFGIVRVQDFLENTNNNTTTPTNSSNSNTNANTNNTTQNADDGDSRDNAREADDQNPGSYDSTEPGGSSGRRPRGRPAGSKNKPKPPVVLTKESPNALRSHVLEISSGSDVAESLSTFANRRHRGVSVLSGSGIVTDVTLRQPAAAAGVITLNGRFEILSLSGAFLPAPSPPGATGLTVYLAGGQGQVVGGAVVGSLVASGPVLVIAATFANATYDRLPLEPEPSGEEVEAKTQQQQSGVNNSASSGPPSTSQALNEQVSMPLFNNLPPNLIPNNDQMQQHEVFWGTPARHPPSY | 378 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele28g1238 | 378 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 178 | 304 | - | - | |
| Lele28g1238 | 378 | MobiDBLite | consensus disorder prediction | 61 | 83 | - | - | |
| Lele28g1238 | 378 | FunFam | AT-hook motif nuclear-localized protein | 181 | 308 | - | - | |
| Lele28g1238 | 378 | MobiDBLite | consensus disorder prediction | 96 | 178 | - | - | |
| Lele28g1238 | 378 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Lele28g1238 | 378 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 112 | 370 | IPR014476 | GO:0003680 | |
| Lele28g1238 | 378 | MobiDBLite | consensus disorder prediction | 301 | 358 | - | - | |
| Lele28g1238 | 378 | CDD | DUF296 | 182 | 264 | IPR005175 | - | |
| Lele28g1238 | 378 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 182 | 294 | IPR005175 | - | |
| Lele28g1238 | 378 | MobiDBLite | consensus disorder prediction | 312 | 358 | - | - | |
| Lele28g1238 | 378 | Gene3D | - | 181 | 317 | - | - | |
| Lele28g1238 | 378 | MobiDBLite | consensus disorder prediction | 96 | 125 | - | - | |
| Lele28g1238 | 378 | ProSiteProfiles | PPC domain profile profile. | 178 | 316 | IPR005175 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele28g1238 | Lele-ChrLele28 | 8159576 | 8164257 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele28g1238 | 47 | 378 | AT-hook Motif Nuclear Localized (AHL) Family | AT3G55560 | 52.786 | 4.64e-79 | 243 |