Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1224 ATGAAGTCAAATGATCAGGGATCTGATCAAAGGAAAAACAAGAGGAATATCACAATGAAGGCCCTGATTCTGGTTGGAGGCTTTGGAACAAGACTGAGGCCATTGACACTCAGTGTCCCCAAACCTCTTGTAGATTTTGCTAACAAACCCATGATCCTGCATCAGATAGAGGCTCTTAAGTCTATTGGAGTTAATGAAGTGGTATTAGCCATCAATTACCAACCAGAGGTGATGTTGAACTTCTTGAAGGAATACGAGGCAAAGCTAGGCATCAAGATCACGTGCTCGCAAGAAACTGAACCACTGGGTACAGCAGGACCTCTGGCTCTTGCCAGGGACAAGCTGATAGATGGCTCTGGAGATCCATTTTTTGTTCTCAACAGTGATGTTATCAGTGAGTACCCACTTAAGGAGATGGTTCAATTCCATAAATCCCATGGAGGAGAGGCATCCATAATGGTGACAAAGGTTGATGAGCCATCGAAGTATGGTGTGGTCGTCATGGAGGAGGCCACAGGGAAGGTTGAGAAATTTGTGGAAAAGCCTAAGTTGTTTGTTGGTAACAAAATCAATGCTGGAATTTACTTATTGAATCCCTCAGTTCTGGATCGCATTGAGCTAAGGCCCACATCTATCGAGAAAGAGGTGTTTCCAAAGATTGCATCAGAGCAAAAGCTATTTGCAATGGTCCTTCCTGGGTTTTGGATGGACATTGGACAACCAAGGGACTATATTTCTGGTCTGAGACTCTACCTGGATTCACTGAAGAAAAAATCTTCTTCCAAGTTATCCACTGGTCCTCACATTGTGGGGAATGTCATAGTGGACGAGACTGCCAAAATTGGCGAAGGATGTCTTATTGGACCTGATGTTGCTATTGGTCCCGGCTGCATAGTCGAGTCAGGCGTTCGTCTCTCCCGCTGCACTGTTATGCGAGGAGTCCGAATTAAGAAACATGCCTGCATTTCCAGCAGCATTATTGGCTGGCATTCCACAGTGGGGCAATGGGCTCGTGTGGAGAACATGACTATTCTCGGAGAAGATGTCCATGTTTGTGATGAGATATACAGCAACGGTGGTGTAGTTCTGCCCCACAAGGAGATCAAGTCCAGCATTTGGAAACCTGAGATAGTCATGTGA 1140 0.4544 MKSNDQGSDQRKNKRNITMKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKSIGVNEVVLAINYQPEVMLNFLKEYEAKLGIKITCSQETEPLGTAGPLALARDKLIDGSGDPFFVLNSDVISEYPLKEMVQFHKSHGGEASIMVTKVDEPSKYGVVVMEEATGKVEKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIASEQKLFAMVLPGFWMDIGQPRDYISGLRLYLDSLKKKSSSKLSTGPHIVGNVIVDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSIWKPEIVM 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1224 379 FunFam mannose-1-phosphate guanyltransferase beta 19 250 - -
Lele28g1224 379 Pfam Nucleotidyl transferase 20 247 IPR005835 GO:0009058|GO:0016779
Lele28g1224 379 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 18 251 IPR029044 -
Lele28g1224 379 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 19 378 - -
Lele28g1224 379 CDD M1P_guanylylT_B_like_N 19 252 IPR045233 GO:0004475|GO:0005525|GO:0009298
Lele28g1224 379 Pfam Bacterial transferase hexapeptide (six repeats) 279 313 IPR001451 -
Lele28g1224 379 Gene3D Hexapeptide repeat proteins 253 373 - -
Lele28g1224 379 SUPERFAMILY Nucleotide-diphospho-sugar transferases 19 330 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1224 Lele-ChrLele28 8049182 8052679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1224 3 154 Eukaryotic Initiation Factors Gene Family AT3G02270 28.662 1.14e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1215 25 8060525 8063296 Lele28g1224 28 8049182 8052679 CCT
Lele28g1224 28 8049182 8052679 Lele25g1213 25 8048935 8056093 CCT
Lele28g1224 28 8049182 8052679 Lele26g1229 26 8025783 8034998 CCT
Lele28g1224 28 8049182 8052679 Lele27g0865 27 16671551 16675439 CCT
Lele28g1224 28 8049182 8052679 Lele28g1222 28 8035421 8040302 CCT
Lele28g1224 28 8049182 8052679 Lele28g1224 28 8049182 8052679 ECH
Lele25g1215 25 8060525 8063296 Lele28g1224 28 8049182 8052679 hybridization
Lele26g1231 26 8038920 8041368 Lele28g1224 28 8049182 8052679 hybridization