Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1222 ATGGACGCCGCAGATCCTTGTCGAGCTTTCGTCAAGGACGTTAGGCGCATTGTCATCAAGGTTGGGACTGCTGTTGTGACCCGTAGTGATGGAAGGTTAGCGGTTGGAAAATTGGGTACGCTCTGTGAGCAGATTAAGGAGCTTCACTCTCTAGGATATGAGGTTATTTTGGTGTCATCTGGTGCTGTAGGCCTTGGTCGCCAAAGGCTTAGATACAGGAAATTACTTAACAGCAGCTTTGCTGATTTACAAAAGCCACAAGTTGAACTTGATGGCAAAGCATGCGCAGCAGTTGGACAAAATAGTCTAATGGCCATATATGATGCTTTGTTCAGTCAGCTTGATGTGACATCAGCTCAACTTCTTGTGACAGACAATGATTTTAGAGATAGATATTTCAGAAAGCAACTTACTGAAACTTTAAAATCTTTGTTAGCACTGAAAGTCATACCCATATTCAATGAAAACGACGCAGTCAGTACTAGGAAAGCTCCATATGAGGTGATATGTTCAAGGCTAGAGTCAATTAGGTGGATTCTTCTGTCTCCTCCGAGTGACCCAAACTCGAGGCTTATTCATACATACGTCAAGGAAAAGCATCAAAATGAAATTACTTTTGGAGAGAAGTCTAGGGTGGGAAGAGGTGGAATGACTGCCAAGGTAAAGGCTGCTGTAAATGCAGCTGAAGCTGGCATTCCTGTTATTATTACCAGTGGTTATGCACCTGATAATATCCTTAAAGTTCTTCAAGGACAATGTATTGGAACCCTCTTCCATAAAGATGCTCATAAGTGGGTCCCAGTAAAAGAGGTATCAGCACGTGAAATGGCAGTTGCTGCTAGGGACTGCTCTAGAAGGCTTCAGGCTTTATCTGATGAAGAGAGGAAGCAAATTTTGCTAAATATAGCTGATGCACTGGAAGCAAATGAAAAAGAGATAAGGACTGAAAATCAGGCTGATGTCACTGATGCACAACAAGCAAATCTTGATAAATCCTTGGTTGCTAGGTTGCTTCTAAAGCCTGGGAAGGCAAGACAATCTCCCACTTTAAGAACTTTCTTAAATTTTAACCTAATGTATGGATGGTGTAAATTTGAACTCACCACAGAAACTTTAATGGTATATTTTATTAACGGACAGATTGCAAGCCTTGCAAAGAACATGAGAACTCTTGCAAACATGGAAGATCCAATTGGTCGAGTATTAAAACGAACTGAGGTTGCAGATGGGCTAGTTCTAGAGAAAACGTCATCTCCTTTAGGTGTTCTCTTGATTGTTTTTGAATCCCGCCCTGATGCCCTAGTACAGATAGCTTCCTTGGCAATTCGAAGTGGCAATGGACTTCTCTTAAAAGGAGGCAAGGAGGCTAAGCGATCAAATGCAATTTTGCACAAAGTAATTGCTGAAGCCATCCCCAAAACTGTTGGTGGAAAACTTATTGGACTTGTGACCTCAAGAGCGGAGATCCCTGAGCTGCTTAAGCTTGATGATGTAATTGATCTGGTTATCCCACGAGGCAGCAACAAACTTGTCTCTAGTATTAAAAGTTCCACTAAAATTCCTGTTCTGGGTCATGCTGGTAAGACCATTATGCTTATGATTAAATGTTACATTCAAGCAGTGCTTGATGGAATTTGCCACATCTATGTTGATAAGTCTGCTAATATGGAGATGGCTAGGCGGATTGTATTGGATGCAAAAATAGATTATCCTGCTGGTTGCAATGCCATGGTAATCCATACTAGTGGATGA 1752 0.4155 MDAADPCRAFVKDVRRIVIKVGTAVVTRSDGRLAVGKLGTLCEQIKELHSLGYEVILVSSGAVGLGRQRLRYRKLLNSSFADLQKPQVELDGKACAAVGQNSLMAIYDALFSQLDVTSAQLLVTDNDFRDRYFRKQLTETLKSLLALKVIPIFNENDAVSTRKAPYEVICSRLESIRWILLSPPSDPNSRLIHTYVKEKHQNEITFGEKSRVGRGGMTAKVKAAVNAAEAGIPVIITSGYAPDNILKVLQGQCIGTLFHKDAHKWVPVKEVSAREMAVAARDCSRRLQALSDEERKQILLNIADALEANEKEIRTENQADVTDAQQANLDKSLVARLLLKPGKARQSPTLRTFLNFNLMYGWCKFELTTETLMVYFINGQIASLAKNMRTLANMEDPIGRVLKRTEVADGLVLEKTSSPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAKRSNAILHKVIAEAIPKTVGGKLIGLVTSRAEIPELLKLDDVIDLVIPRGSNKLVSSIKSSTKIPVLGHAGKTIMLMIKCYIQAVLDGICHIYVDKSANMEMARRIVLDAKIDYPAGCNAMVIHTSG 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1222 583 PRINTS Glutamate 5-kinase family signature 96 124 IPR001057 GO:0005524|GO:0016301
Lele28g1222 583 PRINTS Glutamate 5-kinase family signature 52 66 IPR001057 GO:0005524|GO:0016301
Lele28g1222 583 PRINTS Glutamate 5-kinase family signature 136 157 IPR001057 GO:0005524|GO:0016301
Lele28g1222 583 Pfam Amino acid kinase family 16 164 IPR001048 -
Lele28g1222 583 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 374 540 IPR016162 GO:0016491
Lele28g1222 583 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 543 580 IPR016163 GO:0016620
Lele28g1222 583 Gene3D - 5 263 IPR036393 -
Lele28g1222 583 SUPERFAMILY Carbamate kinase-like 15 260 IPR036393 -
Lele28g1222 583 PANTHER GLUTAMATE SEMIALDEHYDE DEHYDROGENASE 1 577 - -
Lele28g1222 583 SUPERFAMILY ALDH-like 379 577 IPR016161 GO:0016491
Lele28g1222 583 ProSitePatterns Glutamate 5-kinase signature. 210 227 IPR019797 GO:0004349|GO:0006561
Lele28g1222 583 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 264 349 IPR016162 GO:0016491
Lele28g1222 583 FunFam Delta-1-pyrroline-5-carboxylate synthase 4 265 - -
Lele28g1222 583 SUPERFAMILY ALDH-like 274 343 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1222 Lele-ChrLele28 8035421 8040302 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1231 26 8038920 8041368 Lele28g1222 28 8035421 8040302 CCT
Lele27g0862 27 16659890 16662680 Lele28g1222 28 8035421 8040302 CCT
Lele28g1224 28 8049182 8052679 Lele28g1222 28 8035421 8040302 CCT
Lele25g1213 25 8048935 8056093 Lele28g1222 28 8035421 8040302 CCT
Lele27g0865 27 16671551 16675439 Lele28g1222 28 8035421 8040302 ECH
Lele28g1222 28 8035421 8040302 Lele28g1222 28 8035421 8040302 ECH
Lele25g1213 25 8048935 8056093 Lele28g1222 28 8035421 8040302 hybridization
Lele26g1229 26 8025783 8034998 Lele28g1222 28 8035421 8040302 hybridization