Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1220 ATGGAATGGGAGAAAGCGAGTAGTGACACTGGTGACAATAGTGGAGTGGAGGAGAGTGATTATGGTTCAGAGGGGTTTTTCTGTGATTTTGAGAATAGTGATGAAGAAGATATGATTGTGATAAAGTGGGTGGTAGATTTTGGGGATCCGTCAATGGCGTTGTTGGCGGTCTGTGGAGGGGATACAGTGAAGTTGTTCGATGCCTCGGTCAAGCCCGGCGATCCTTGCTCGTTGAGCTATACCCCTTCTCCTGGATTTCAAGTAAATTCAGTGAAGTGGAACCATACCAATTTGGTTGTGGCCAGTGCTGGAGATGATAAGAAGATCTCGTTGTGGCATAAAAATGGGCAGAGCATGGGTACCATTCCCGTAGCTGGGACTGATAGTGGAGACAACATAGAGGAGTCTATAATGGCTATCAGCTTCAGTAACAAGGCTTCCAGATATCTATGCTCTGGAGGAAGTGGTCAAGTTGTAAGGATATGGGATTTGCAAAGGAAGCGCTGTATTAAATGGTTGAGAGGTCATACTAGCCCTATTACAGGTGTAATGTACAACTGCAAAGATGAACACTTGGCTTCTATCAGCCTTAGTGGGGGCCTTATACTTCATAACCTTGCTTCTGGTGCAAGGGCTGCTGAACTCAAAGACCCCAATGAACAGGTGTTGAGAGTTCTTGACTATTCCCGGATTAGCCGTCACCTTTTGGTGACAGCTGGTGATGATGGTACTGTTCATCTGTGGGATACAACCGGCCGGAACCCTAAGGTTTCGTGGTTGAAGCAACATTCTGCACCGACCGCTGGTATTAGCTTCTCTCCATCCAATGACAAGATAATTGCTAGCGTGGGCCTTGACAAAAAATTATATACTTATGACACTGGTTCTAGAAGACCGTCATCTTGTATATCTTATGAGGCACCATTTTCTTCATTGGCCTTTAGGGATGATGGATGGATGCTGGCAGCTGCAACAAGCAATGGTAGGGTTGCTTTCTACGATGTTCGTGGAAAACCACAACCTTTTGTCGTTCTTCATGCTTATGGTAGCTCCGAGGCTGTTACAGGCATATGCTGGCAGAGGTCAAAACCTGTAAGCGTCAATGAAGCTAATTGCACTGCTGACACTGCACTTGTGGGAGATGCAGTTGAAGATTCCGTCCTTATGCCAGATCCTTTACCTTCTGGAACCTCATCCAGTGTTTCTCTATCTACTGTAGTGTCAAGTTCTAGGAATTCTGGCCGTCTAAATGCCTCCATTGAAGTATCTTCGCTTAAATCATCTACCAGTGGATTGACATCAAGCATGCTAAATGTGTCTAGTGGAGAGGAAACACCATATCGAAGCCATCTATGGCCAGGTGGAAATCTCTCAAAGCTAAATGCTCCACGTTCTAGTTATAACTTCAAAGATGACATGGAGGTTTTCTCCCCACTTGTGGATGTTCAACCAATAACACCCTCACTATGGGATGAAAATGGAGCAAAGAAGGATAACATATTTGCAGATAGGAAACCTTCATCAATGCTTTTTCCTTCATCTAGTAGGAGATTTCCAAATACAGATGAGGGCAGCACTGATCATCCAATATTTGATTGGAAATCTGGCTCAATTTCCAAGCAGGATGAAACTCGATCTTCATTTCCACCTGTGGAATCAGTTGTTCCCCCATCTTCCAAGGATGAAGTTTCTTCAATCACTCCTCCAGAAGCTTGGGGGGGTGAGAGGTTATCCGAAAAATATACCTACCTTCGTCAATCCATTAATGCACCTTCTCGTTTTGGGACATTGGCTTCTGGTGTTCATACTGCAGGTTCTGGTGTTCATACTGCAGGATCTATGTCTTCTGGATTGCAGGCTTCCCCATCATCAGATGTTACTTCTCTTACAACTTCCAGCATCAATTTTGCCAATTTACGCAGCAAAGATGTCTCTACTAGTCAGGAGACTTCATTAAGTTTTCCTGATCACTTGTCTTCTACCTCCTTGTCTATCAATACAAAATCCATTCTCGGACAGGTTAGCCTGGATTCCCCACGAATGTCATCTTTGACCCGACGATTTTCCACTTATGCGGAGAGAATAAGCACTACATCTACCTTCAGTGATGGAGTATCTCTTTCAGTAGGATCACCTAAGATGAAAAAATCTGGAGCAGAAACCAAAGAAGAACTTCTAAATAGCTTGCTGCTCAAGTCTGATACATCAGTTTCAACAGAATCAAGCTCTATATTACCTGCAAATGGTGTAAACGCACAACCGCCAAAAGCATCTCAGTTAGATGCACAGCCAGGTTCCTCATTTACACTTACGCTTTTTCAACGAACCTTGGAAGAAACTCTAGATTCGCGTCTGAAACCCATTCATGAGGATATGAGGAACCTTCATATTGAAATGTTAAGACAGTTTCATCTGCAGGAGACGGAAATGTTTGGTGTGATGAAATCCATTCTGGAGAACCAAGCTGAGTTGATGAAGGAAGTGAAGTCTATTCGTCAGGAATTTCAGCAGCTCCGGCAGATGCTTTGA 2529 0.4393 MEWEKASSDTGDNSGVEESDYGSEGFFCDFENSDEEDMIVIKWVVDFGDPSMALLAVCGGDTVKLFDASVKPGDPCSLSYTPSPGFQVNSVKWNHTNLVVASAGDDKKISLWHKNGQSMGTIPVAGTDSGDNIEESIMAISFSNKASRYLCSGGSGQVVRIWDLQRKRCIKWLRGHTSPITGVMYNCKDEHLASISLSGGLILHNLASGARAAELKDPNEQVLRVLDYSRISRHLLVTAGDDGTVHLWDTTGRNPKVSWLKQHSAPTAGISFSPSNDKIIASVGLDKKLYTYDTGSRRPSSCISYEAPFSSLAFRDDGWMLAAATSNGRVAFYDVRGKPQPFVVLHAYGSSEAVTGICWQRSKPVSVNEANCTADTALVGDAVEDSVLMPDPLPSGTSSSVSLSTVVSSSRNSGRLNASIEVSSLKSSTSGLTSSMLNVSSGEETPYRSHLWPGGNLSKLNAPRSSYNFKDDMEVFSPLVDVQPITPSLWDENGAKKDNIFADRKPSSMLFPSSSRRFPNTDEGSTDHPIFDWKSGSISKQDETRSSFPPVESVVPPSSKDEVSSITPPEAWGGERLSEKYTYLRQSINAPSRFGTLASGVHTAGSGVHTAGSMSSGLQASPSSDVTSLTTSSINFANLRSKDVSTSQETSLSFPDHLSSTSLSINTKSILGQVSLDSPRMSSLTRRFSTYAERISTTSTFSDGVSLSVGSPKMKKSGAETKEELLNSLLLKSDTSVSTESSSILPANGVNAQPPKASQLDAQPGSSFTLTLFQRTLEETLDSRLKPIHEDMRNLHIEMLRQFHLQETEMFGVMKSILENQAELMKEVKSIRQEFQQLRQML 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1220 842 MobiDBLite consensus disorder prediction 506 571 - -
Lele28g1220 842 Gene3D - 33 215 IPR015943 GO:0005515
Lele28g1220 842 SUPERFAMILY WD40 repeat-like 59 360 IPR036322 GO:0005515
Lele28g1220 842 MobiDBLite consensus disorder prediction 741 763 - -
Lele28g1220 842 MobiDBLite consensus disorder prediction 540 565 - -
Lele28g1220 842 FunFam Protein NEDD1 48 222 - -
Lele28g1220 842 Pfam WD domain, G-beta repeat 234 249 IPR001680 GO:0005515
Lele28g1220 842 Pfam WD domain, G-beta repeat 86 112 IPR001680 GO:0005515
Lele28g1220 842 MobiDBLite consensus disorder prediction 1 20 - -
Lele28g1220 842 Gene3D - 216 372 IPR015943 GO:0005515
Lele28g1220 842 SMART WD40_4 296 334 IPR001680 GO:0005515
Lele28g1220 842 SMART WD40_4 253 293 IPR001680 GO:0005515
Lele28g1220 842 SMART WD40_4 73 113 IPR001680 GO:0005515
Lele28g1220 842 SMART WD40_4 208 249 IPR001680 GO:0005515
Lele28g1220 842 SMART WD40_4 115 163 IPR001680 GO:0005515
Lele28g1220 842 SMART WD40_4 166 205 IPR001680 GO:0005515
Lele28g1220 842 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 249 IPR001680 GO:0005515
Lele28g1220 842 PANTHER PROTEIN NEDD1 47 842 IPR044621 GO:0010968|GO:0140496
Lele28g1220 842 Coils Coil 814 842 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1220 Lele-ChrLele28 8019702 8029316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1220 136 335 Miscellaneous Gene Families AT5G08390 22.857 2.84e-07 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1211 25 8032388 8041222 Lele28g1220 28 8019702 8029316 hybridization
Lele26g1227 26 8009923 8017882 Lele28g1220 28 8019702 8029316 hybridization