Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1197 ATGGCATGTGGCGATTGGCAGTTATCCTTCCCGTTTCCACCTTCAAAACCAAATTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATTAGAATTCGAAAAGGCTACATATCCTTCACTCCATCGCCTTTTCAGCACAATAAAGAAGAAACCCACCTCACAGCTTTGTCCAAGAAGACTGAGCATTTTCTGAAGAAGAAAGATGGGGTTCGGTCCTCTGGGGGTAAAACGGCTAAATCTGAGTCGTTCATCGATTCCAGTGCTGAGTCGAGAGAGACGAGTTCGAGTGCGTCGAGCTCCTTCGATTCAGCTGAAGAAACTAAAGCAAAAGGGTCGTCTTCGCCTACTCCTCTTGGCTGGCCCATTCGCAAGGCTACAATTTCCAAGTGCAGTAAATCTGATGACAAGGAAAACCAACCTGTTTCCCATGAAGACAGCTCAAAATTTAGCAGAATCGGTTCAAAAATGTCAGAGATTAATATGATGAAGGAAAGATTTGCAAAATTACTGCTTGGTGAAGACATGTCAGGGTCTGGAAAAGGGGTTTGCACAGCTCTAGCTATCTCAAATGCTATTACTAATCTCTGTGCCACCGTATTTGGGCAATTATGGAGGCTAGAACCTCTACCTGATGAAAAGAAAGCAATGTGGCGAAGAGAAATGGAGTGGCTTCTTGGCGTTGGTGATCACATTGTCGAATTAATCCCTTCTTGGCAAACATTTCCAGATGGAAGCAAGCTTGAGGTAATGACTTGCAGGCCGAGGTCGGATCTTTTCATGAATCTTCCAGCCCTTCGCAAACTCGACAACATGCTAATGGAAATATTAGACAGTTTCACGAGTAGAGAGTTTTGGTACGTTGATCAAGGAATTGTGGCCCCAGATGCAGATGGGTCAGGCTCATTTCGCAAGCCAATGCAGAGACAAGAGGAGAAATGGTGGCTTCCTGTGCCTCGTGTTCCTCCTTCAGGTCTGACTGAGAACTCGAGAAAGAAATTGAACCATACACGAGAATGTGCAAACCAAATTCTGAAAGCAGCCATGGCCATCAACGACAATGCTTTAGCTGAAATGGAAGTTCCTGATTCTTACCTAGAAGCCCTCCCCAAGAATGGAAGAAGCTGCCTGGGGGATTTCATATACCGTTACATAACATCAGATCAGTTCTCTGCAGAGTGTCTGCTTGATTGCCTCGACCTTTCCAATGAACATGTGGCTCTGGAGATTGCTAACAGAGTGGAAGCTTCTATATATGTATGGCGTAAAAGGGCTCATTCGAGACCCCCACCTACTAATCCTAGCCGTTCAACAGCAAAATCATCCTGGGAAATGGTCAGAGATTTCATGGCTGATGGAGACAAGAGAGAATTGCTCGCGGAAAGAGCTGAAAACTCTCTGCTTTCCTTGAAGCAGAGGTTCCCTGGTTTAACTCAAACCACTCTCGACACCAGCAAGATCCAATGCAACAAGGACGTGGGTAAGTCAATTCTGGAGAGCTACTCAAGGGTATTGGAGAGCATGGCGTTTAACATTCTGGCTCGTATTGATGATTTGCTGTACGTGGACGACTTGACAAAACATTCAGACAGGTTTCCGTTGGTTTTATCGACGGTTAGTCAGCATTCTCAGCAGAAGTTGTCTCGTCCAATATCGGTGTCTGTCTCAGGCACTCCTCGCAAATCTGTTGTTAATGGCAACAATAATAACTTTTCACCGGCACCACCGCTTATTAGTCCTGCAAGAGGAGAGAGAACTCCCTTCATCCACAACAACAACATCATGAAACCTCATCGTCGTGGTTTTGGGGTGCAAAGGGTATTGTCGAATTATCTTGGGGTAGATACGAAAGCCAAAATATGCAGCAATTCAAGTGAAATGAGTTGTTTGAACACGAGTACTGCAAGTAGAACAGAAACAGAATAA 1923 0.4503 MACGDWQLSFPFPPSKPNLRERERERERGIRIRKGYISFTPSPFQHNKEETHLTALSKKTEHFLKKKDGVRSSGGKTAKSESFIDSSAESRETSSSASSSFDSAEETKAKGSSSPTPLGWPIRKATISKCSKSDDKENQPVSHEDSSKFSRIGSKMSEINMMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCATVFGQLWRLEPLPDEKKAMWRREMEWLLGVGDHIVELIPSWQTFPDGSKLEVMTCRPRSDLFMNLPALRKLDNMLMEILDSFTSREFWYVDQGIVAPDADGSGSFRKPMQRQEEKWWLPVPRVPPSGLTENSRKKLNHTRECANQILKAAMAINDNALAEMEVPDSYLEALPKNGRSCLGDFIYRYITSDQFSAECLLDCLDLSNEHVALEIANRVEASIYVWRKRAHSRPPPTNPSRSTAKSSWEMVRDFMADGDKRELLAERAENSLLSLKQRFPGLTQTTLDTSKIQCNKDVGKSILESYSRVLESMAFNILARIDDLLYVDDLTKHSDRFPLVLSTVSQHSQQKLSRPISVSVSGTPRKSVVNGNNNNFSPAPPLISPARGERTPFIHNNNIMKPHRRGFGVQRVLSNYLGVDTKAKICSNSSEMSCLNTSTASRTETE 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1197 640 MobiDBLite consensus disorder prediction 51 74 - -
Lele28g1197 640 MobiDBLite consensus disorder prediction 128 151 - -
Lele28g1197 640 Gene3D PRONE domain, subdomain 1 151 391 - -
Lele28g1197 640 Gene3D PRONE domain, subdomain 1 392 531 - -
Lele28g1197 640 FunFam Rop guanine nucleotide exchange factor 1 150 390 - -
Lele28g1197 640 FunFam Rop guanine nucleotide exchange factor 14 391 531 - -
Lele28g1197 640 MobiDBLite consensus disorder prediction 551 578 - -
Lele28g1197 640 MobiDBLite consensus disorder prediction 1 152 - -
Lele28g1197 640 MobiDBLite consensus disorder prediction 75 114 - -
Lele28g1197 640 MobiDBLite consensus disorder prediction 17 33 - -
Lele28g1197 640 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 157 526 IPR005512 GO:0005085
Lele28g1197 640 ProSiteProfiles PRONE domain profile. 149 532 IPR005512 GO:0005085
Lele28g1197 640 MobiDBLite consensus disorder prediction 551 574 - -
Lele28g1197 640 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 79 589 IPR038937 GO:0005085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1197 Lele-ChrLele28 7840679 7843305 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1198 25 7927298 7929706 Lele28g1197 28 7840679 7843305 CCT
Lele26g1196 26 7782278 7786532 Lele28g1197 28 7840679 7843305 CCT
Lele27g0888 27 16880523 16882225 Lele28g1197 28 7840679 7843305 CCT
Lele28g1188 28 7752864 7758577 Lele28g1197 28 7840679 7843305 CCT
Lele25g1190 25 7839753 7841052 Lele28g1197 28 7840679 7843305 CCT
Lele27g0880 27 16794877 16797288 Lele28g1197 28 7840679 7843305 ECH
Lele28g1197 28 7840679 7843305 Lele28g1197 28 7840679 7843305 ECH
Lele25g1198 25 7927298 7929706 Lele28g1197 28 7840679 7843305 hybridization
Lele26g1205 26 7882069 7884434 Lele28g1197 28 7840679 7843305 hybridization