Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1188 ATGGCTACGATCGCGGTCATCGCTCCACCTCTGTCTCTCTCTCCACTTTCTTACCATTTTCTCACTAAAGAAACCCACATCACCATGATCTCTCCTCGCCTGAGTGCCAGGATTGATCCATTTTTGGGGACTTTGACGGATATAGTGAGGTTTCCCACCCTCCCCCACAATAGTTGGCCACCCAAACGACACCATTCCCTGCGTTCCACTCCATCGGCTTCCTCCCCACTCGTCCTCAAGGTCTCCGAAGGAGGAGCCCTTTCTCTCTCTCCCGACTGGCCCATTACCACCAAGATCCAGAAAAGTAGAATTGGAATGGGTAAAGGGAAGGACCTAATTTCTGCACGGCTCAGATTTTCTGGGTCTTCAATACTTGAAGAAAAGTCATACATTTTAGGTAACTTCATTAGAATTGCAGGAAAACAAGGCGGCGCTTGGGGAGCAGCCTTCCTCTTGGGTAATGTTAGGTTCTTCCACCTATCACGCCACCTTCTATCTCATTCGTCCCATCTCCTCAATAATCCACTGTCATCTTTTCAGGTTCCCAAGTTAACCGAGGCACGTTTCTTGTCGGACTCCGATCAAGGCCGGCCTCCCAAAATGAAGACTCAGAGTCGTCTATTCACGTTCGGGCTTATCGCTTCCTGGTACTCCTCCAACATTGGGGTCCTCTTGCTCAACAAGTACTTGCTCAGCAACTATGGCTTCAAGTACCCGATCTTCCTCACCATGTGCCACATGACCGCTTGCTCCTTGCTCAGCTACATTGCTATAGCTTGGTTGAAGGTAGTGCCTATGCAGACCATTCGATCCCGGGTCCAGTTCTTCAAGATCTCCGCCCTCAGTTTCGTCTTCTGCATCTCCGTCGTATTTGGCAACATTTCGCTTAGGTACTTGCCCGTGTCCTTTAACCAGGCAATTGGTGCCACAACTCCATTCTTCACTGCAGTTTTTGCTTACCTCATGACTTTCAAGAGGGAGGCTTGGCTTACTTACGTGACCCTTATTCCTGTTGTTACTGGAGTCATCATTGCAAGCGGGGGTGAACCAAGCTTCCATTTATTTGGGTTCATAATATGTGTTGCCGCCACAGCTGCAAGGGCCCTAAAAACTGTGTTACAAGGAATTTTACTTTCTTCTGAAGGGGAGAAGCTGAATTCTATGAACCTTCTTCTTTACATGGCTCCAATGGCAGTTGTTTTCCTTCTTCCAGCCACACTTTTAATGGAAGAAAATGTGGTTGGTATCACACTAGCTCTTGCCAGAGATGATGTCAAGATCATCTGGTATCTGCTATTTAACTCAGCACTCGCATATTTTGTCAACTTGACCAACTTTTTGGTCACAAAGCACACCAGTGCTCTTACCCTTCAGGTACTCGGGAATGCTAAAGGGGCTGTGGCTGTAGTGGTTTCGATTCTTATATTTAGAAACCCAGTGTCTGTCACTGGAATGCTAGGTTACACGCTCACGGTGTTTGGAGTTATACTTTACAGTGAAGCCAAGAAGCGAAGCAAAACACAACAGTCTTAG 1533 0.4736 MATIAVIAPPLSLSPLSYHFLTKETHITMISPRLSARIDPFLGTLTDIVRFPTLPHNSWPPKRHHSLRSTPSASSPLVLKVSEGGALSLSPDWPITTKIQKSRIGMGKGKDLISARLRFSGSSILEEKSYILGNFIRIAGKQGGAWGAAFLLGNVRFFHLSRHLLSHSSHLLNNPLSSFQVPKLTEARFLSDSDQGRPPKMKTQSRLFTFGLIASWYSSNIGVLLLNKYLLSNYGFKYPIFLTMCHMTACSLLSYIAIAWLKVVPMQTIRSRVQFFKISALSFVFCISVVFGNISLRYLPVSFNQAIGATTPFFTAVFAYLMTFKREAWLTYVTLIPVVTGVIIASGGEPSFHLFGFIICVAATAARALKTVLQGILLSSEGEKLNSMNLLLYMAPMAVVFLLPATLLMEENVVGITLALARDDVKIIWYLLFNSALAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFRNPVSVTGMLGYTLTVFGVILYSEAKKRSKTQQS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1188 510 PANTHER SOLUTE CARRIER FAMILY 35 210 503 - -
Lele28g1188 510 Pfam Triose-phosphate Transporter family 212 499 IPR004853 -
Lele28g1188 510 SUPERFAMILY Multidrug resistance efflux transporter EmrE 397 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1188 Lele-ChrLele28 7752864 7758577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1188 200 506 Organic Solute Cotransporters AT3G11320 89.251 0.0 565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1189 25 7828932 7830659 Lele28g1188 28 7752864 7758577 CCT
Lele26g1184 26 7690216 7701508 Lele28g1188 28 7752864 7758577 CCT
Lele27g0898 27 16958221 16958888 Lele28g1188 28 7752864 7758577 CCT
Lele28g1177 28 7677047 7677707 Lele28g1188 28 7752864 7758577 CCT
Lele28g1188 28 7752864 7758577 Lele25g1198 25 7927298 7929706 CCT
Lele28g1188 28 7752864 7758577 Lele26g1205 26 7882069 7884434 CCT
Lele28g1188 28 7752864 7758577 Lele27g0880 27 16794877 16797288 CCT
Lele28g1188 28 7752864 7758577 Lele28g1197 28 7840679 7843305 CCT
Lele27g0888 27 16880523 16882225 Lele28g1188 28 7752864 7758577 ECH
Lele25g1189 25 7828932 7830659 Lele28g1188 28 7752864 7758577 ECH
Lele26g1196 26 7782278 7786532 Lele28g1188 28 7752864 7758577 ECH
Lele28g1188 28 7752864 7758577 Lele25g1189 25 7828932 7830659 ECH
Lele28g1188 28 7752864 7758577 Lele26g1196 26 7782278 7786532 ECH
Lele28g1188 28 7752864 7758577 Lele27g0888 27 16880523 16882225 ECH
Lele28g1188 28 7752864 7758577 Lele28g1188 28 7752864 7758577 ECH
Lele25g1189 25 7828932 7830659 Lele28g1188 28 7752864 7758577 hybridization
Lele26g1196 26 7782278 7786532 Lele28g1188 28 7752864 7758577 hybridization