Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1187 ATGCAAGTTGATACGAGTAATCTGATTCGCTGCGTTGGGGGTTTGAAATTGGTGATAAAGCTAGATCCAAAGGGCATAGCTATGTCTTTCATCGGTACCCAACAGAAGTGCAAGGCTTGCGAGAAAACGGTCTATCCCGTGGATCAGCTATCCACTGATGGCGTTGCTTACCATAAAGCTTGCTTCAGGTGCTCTCATTGTAAAGGAACATTAAAGCTAAGCAACTATTCCTCAATGGAGGGTGTTCTCTACTGTAAGCCTCATTATGAGCAGCTATTCAAGGAGACAGGCAGTTTCAACAAGAACTTTCAGTCACCTGCAAAGCTAGCTGACAAGACAACTCCTGAGCTGACAAGGTCCCCTAGTAAGGCTGCCAGCATGTTTTCTGGGACACAAGAGAAATGTGCTACATGCGGCAAAACTGCTTATCCATTGGAGAAGGTAACGGTGGAGGGCCAAGCCTATCACAAATCATGTTTCAAGTGTTCACATGGTGGCTGTCCCATATCACCATCAAATTATGCAGCTCTTGAGGGCATTTTGTATTGCAAACACCATTTCTCTCAGCTTTTTAAGGAGAAAGGAAGCTATAGTCATCTTATCAAGTCTGCATCAATGAAAAGAGCAGCCACCCCAGTTCCAGAATCCTAA 651 0.447 MQVDTSNLIRCVGGLKLVIKLDPKGIAMSFIGTQQKCKACEKTVYPVDQLSTDGVAYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGSFNKNFQSPAKLADKTTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFSQLFKEKGSYSHLIKSASMKRAATPVPES 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1187 216 Pfam LIM domain 37 92 IPR001781 -
Lele28g1187 216 Pfam LIM domain 135 190 IPR001781 -
Lele28g1187 216 PANTHER OS06G0237300 PROTEIN 29 136 IPR045268 -
Lele28g1187 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 29 62 - -
Lele28g1187 216 ProSiteProfiles LIM domain profile. 35 95 IPR001781 -
Lele28g1187 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 161 200 - -
Lele28g1187 216 ProSiteProfiles LIM domain profile. 133 193 IPR001781 -
Lele28g1187 216 CDD LIM2_SF3 135 195 - -
Lele28g1187 216 ProSitePatterns LIM zinc-binding domain signature. 37 71 IPR001781 -
Lele28g1187 216 FunFam LIM domain and actin-binding 1 31 101 - -
Lele28g1187 216 Gene3D Cysteine Rich Protein 129 199 - -
Lele28g1187 216 Gene3D Cysteine Rich Protein 31 101 - -
Lele28g1187 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 63 103 - -
Lele28g1187 216 SMART lim_4 134 186 IPR001781 -
Lele28g1187 216 SMART lim_4 36 88 IPR001781 -
Lele28g1187 216 CDD LIM1_SF3 33 95 - -
Lele28g1187 216 FunFam LIM domain and actin-binding 1 129 199 - -
Lele28g1187 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 127 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1187 Lele-ChrLele28 7747359 7752032 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele28g1187 LIM 5.3e-11 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g1187 28 7747359 7752032 Lele28g1187 28 7747359 7752032 ECH
Lele25g1188 25 7823198 7827848 Lele28g1187 28 7747359 7752032 hybridization
Lele26g1195 26 7779338 7781443 Lele28g1187 28 7747359 7752032 hybridization