Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1184 ATGGAAACTCTGTACCCATCTTCTTCTTTCATGCCAAACTCAGACTGGTACGTTCAAGATTTCATCAGCAGCAGCAACGACACAGAATGGACCAGAGAGGAGAACAAGAGATTCGAGAGTGCCCTTGCCATATACGATAAGGACACACCAGATAGGTGGTTGAAGGTTGCAGCCATGATCCCAGGAAAAACCGTGTACGATGTTATCAAGCAGTACAGAGAACTCGAAGAAGACATAGGCGAAATCGAAGCGGGTCGGGTCCCCATACCCGGGTATCTAGCTTCTCCTTTCACCTTTGAGTTGGTTGATCCCCAGAATTATGATGCACACAGGAAGAGGCCCGTAGCTTTCAAGGGTTCTTCTTCTGATCATGAGAGAAAGAAAGGAGTGCCTTGGACTGAAGAAGAACACAGGCGTTTTCTCATGGGGCTTCTCAAGTATGGCAAAGGAGATTGGAGGAACATATCGAGGAACTTCGTGGTGACGAAGACACCGACACAAGTGGCGAGTCATGCGCAGAAGTACTACATAAGACAGAAGCTTTGTTCTGGAGCGAACAACAAAAGGAGACCCAGCATACACGACATAACCATTGTTAATGTCACAGAATCTAGTACCACCACCCCACAAGACAACAACAACAAGGTCCTTCATCAATTAAATGATCATCATCATCAGTCTCCTATGTTCTCACAACATCAGATGCCAAATGATATTGATGGGGTTTTCAACCCTAGTTGTGATGACAGTTTCTTGCATTCATCTTCATCTGATATTGATCGTGTCCTTCGTGAGGCTTATGGATTTAGGGCGAATTCTGGGGACTTCAGTAACCCAGCTGCTGTCTTAGGTATTCATGCATTGTAA 867 0.4544 METLYPSSSFMPNSDWYVQDFISSSNDTEWTREENKRFESALAIYDKDTPDRWLKVAAMIPGKTVYDVIKQYRELEEDIGEIEAGRVPIPGYLASPFTFELVDPQNYDAHRKRPVAFKGSSSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLCSGANNKRRPSIHDITIVNVTESSTTTPQDNNNKVLHQLNDHHHQSPMFSQHQMPNDIDGVFNPSCDDSFLHSSSSDIDRVLREAYGFRANSGDFSNPAAVLGIHAL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1184 288 CDD SANT 29 75 IPR001005 -
Lele28g1184 288 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 25 236 IPR043363 -
Lele28g1184 288 ProSiteProfiles Myb-like domain profile. 124 176 IPR001005 -
Lele28g1184 288 SUPERFAMILY Homeodomain-like 28 79 IPR009057 -
Lele28g1184 288 Gene3D - 22 89 - -
Lele28g1184 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 124 180 IPR017930 -
Lele28g1184 288 CDD SANT 131 175 IPR001005 -
Lele28g1184 288 ProSiteProfiles SANT domain profile. 132 180 IPR017884 -
Lele28g1184 288 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 127 179 IPR006447 GO:0003677
Lele28g1184 288 ProSiteProfiles SANT domain profile. 25 80 IPR017884 -
Lele28g1184 288 FunFam transcription factor MYB1R1 130 181 - -
Lele28g1184 288 SUPERFAMILY Homeodomain-like 126 180 IPR009057 -
Lele28g1184 288 Gene3D - 130 181 - -
Lele28g1184 288 SMART sant 128 178 IPR001005 -
Lele28g1184 288 SMART sant 26 78 IPR001005 -
Lele28g1184 288 Pfam Myb-like DNA-binding domain 29 74 IPR001005 -
Lele28g1184 288 Pfam Myb-like DNA-binding domain 131 175 IPR001005 -
Lele28g1184 288 FunFam Transcription factor SRM1 22 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1184 Lele-ChrLele28 7735073 7736031 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele28g1184 Myb_DNA-binding 1.2e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1186 25 7810559 7811509 Lele28g1184 28 7735073 7736031 CCT
Lele28g1184 28 7735073 7736031 Lele25g1185 25 7800085 7803831 CCT
Lele28g1184 28 7735073 7736031 Lele26g1191 26 7749338 7753330 CCT
Lele28g1184 28 7735073 7736031 Lele27g0893 27 16907557 16911150 CCT
Lele28g1184 28 7735073 7736031 Lele28g1183 28 7724630 7728618 CCT
Lele25g1177 25 7738359 7740074 Lele28g1184 28 7735073 7736031 CCT
Lele28g1184 28 7735073 7736031 Lele25g1194 25 7880872 7883036 CCT
Lele28g1184 28 7735073 7736031 Lele26g1201 26 7832432 7835036 CCT
Lele28g1184 28 7735073 7736031 Lele27g0884 27 16832001 16834161 CCT
Lele28g1184 28 7735073 7736031 Lele28g1194 28 7795968 7798222 CCT
Lele27g0892 27 16899624 16900574 Lele28g1184 28 7735073 7736031 ECH
Lele25g1186 25 7810559 7811509 Lele28g1184 28 7735073 7736031 ECH
Lele26g1192 26 7759642 7760603 Lele28g1184 28 7735073 7736031 ECH
Lele28g1184 28 7735073 7736031 Lele25g1186 25 7810559 7811509 ECH
Lele28g1184 28 7735073 7736031 Lele26g1192 26 7759642 7760603 ECH
Lele28g1184 28 7735073 7736031 Lele27g0892 27 16899624 16900574 ECH
Lele28g1184 28 7735073 7736031 Lele28g1184 28 7735073 7736031 ECH
Lele25g1186 25 7810559 7811509 Lele28g1184 28 7735073 7736031 hybridization
Lele26g1192 26 7759642 7760603 Lele28g1184 28 7735073 7736031 hybridization