Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1177 ATGGAAGATGGCATGTCAGGGTTTTGTATCCGAACAGGAAGTTTTCGGAGAGGTGATAGTAATAATAGTGGAAGTAGTGGAACTAAGTGTGGTCGTTGGAATCCGACAACGGAACAGGTTAAGCTTTTAACTGATTTGTTCATGTCTGGTCTGAGAACTCCAAGCACTGATCAGATTCAGAAGATCTCCACCGAGCTTAGCTATTATGGCAAGATTGAGAGCAAGAATGTGTTTTATTGGTTTCAGAACCATAAAGCCAGGGAAAGGCAAAAGCGTCGCAAGGTATCATTTCACGACAAGGATCTCAGTAATAATAATAATATTCGTCGTCAAAACAACTCTCTGTTATCTTCCACACACGATTTTGGGGAGGCGGATCAAGTTCAAGAGCCAGAGAGAGTTCTGGAGACTCTTCAACTGTTTCCATTGAACTCCATTGGGGAATCAGAAACAGAGAAACTGAGGGCACTAGCAAGTAAATATGGAGATAATAGTACGAAGATGTTTCAGTCATCAGTAAGTGAACATATGGAGAACCCAGCATTAGATTTGCGCTTAAGCTTTCTGTAA 570 0.414 MEDGMSGFCIRTGSFRRGDSNNSGSSGTKCGRWNPTTEQVKLLTDLFMSGLRTPSTDQIQKISTELSYYGKIESKNVFYWFQNHKARERQKRRKVSFHDKDLSNNNNIRRQNNSLLSSTHDFGEADQVQEPERVLETLQLFPLNSIGESETEKLRALASKYGDNSTKMFQSSVSEHMENPALDLRLSFL 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1177 189 Pfam Homeodomain 30 90 IPR001356 GO:0003677
Lele28g1177 189 SUPERFAMILY Homeodomain-like 26 94 IPR009057 -
Lele28g1177 189 FunFam WUSCHEL-related homeobox 11 29 97 - -
Lele28g1177 189 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 16 111 IPR044555 GO:0003700|GO:0099402
Lele28g1177 189 SMART HOX_1 28 95 IPR001356 GO:0003677
Lele28g1177 189 Gene3D - 29 97 - -
Lele28g1177 189 ProSiteProfiles 'Homeobox' domain profile. 26 91 IPR001356 GO:0003677
Lele28g1177 189 CDD homeodomain 32 92 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1177 Lele-ChrLele28 7677047 7677707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1177 8 189 Wox Gene Family AT3G11260 54.124 1.76e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lele28g1177 Homeodomain 2.7e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1182 25 7763149 7763810 Lele28g1177 28 7677047 7677707 CCT
Lele28g1177 28 7677047 7677707 Lele25g1189 25 7828932 7830659 CCT
Lele28g1177 28 7677047 7677707 Lele26g1196 26 7782278 7786532 CCT
Lele28g1177 28 7677047 7677707 Lele27g0888 27 16880523 16882225 CCT
Lele28g1177 28 7677047 7677707 Lele28g1188 28 7752864 7758577 CCT
Lele27g0898 27 16958221 16958888 Lele28g1177 28 7677047 7677707 ECH
Lele28g1177 28 7677047 7677707 Lele28g1177 28 7677047 7677707 ECH
Lele25g1182 25 7763149 7763810 Lele28g1177 28 7677047 7677707 hybridization
Lele26g1184 26 7690216 7701508 Lele28g1177 28 7677047 7677707 hybridization