Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1175 ATGGAGGCGAGCGAGCGCACCGTGTTGCAGTTCTCTTCCTCTTCGCAGACCTTATCTGCGAAGGTTCACCCTCTTGTTGTCTTCAATATCTGTGACTGCTATGTCCGACGTCCGGACCAAGCGGAGCGCGTCATCGGAACACTCCTTGGCTTTGTCTTGCCCGATGGAACTGTCGATATCCGTAATTCTTATGCTGTTCCCCACAATGAGTCTCTAGGACAGGTTGCTCTGGATATTGAGTACCACCACAATATGTTGATTTCCCACCAAAAAGTGAATCCAAAGGAGGTCATAGTTGGGTGGTATTCAACTGGTCTTGGAGTGAATGGGGGTAGTGCATTAATCCATGAATTTTATTCTCGTGAAGTGCCCAATCCTATACATTTGACAGTTGATACAGGATTCACAAATGGAGAGGGAACTATAAAAGCATATGTGTCACACAATTTATCTCTTGGAGATTGGCAAATTGCTGCTCAGTTTCAAGAAATTCCTCTGGATCTTCGCATGGTTGAAGCTGAGCGAGTTGGATTTGATACTCTGAAGGAAACCACTGTTGACAAAATCCCAAATGATTTGGAAGGGATGGAAACATCAATGGAACGGCTACTAGCCTTGATTGATGAGATCTACAAATATGTTGAGGATGTTGTGGAAGGGCGTGTTGTGCCAGACAACAATGTCGGGAGGTTTATATCCCATGCTGTAGGTTCCCTTCCCAAATTGCCCCCTTCAGCTTTTGATAAGCTAGTGAATGATAGTTTGCAGGACCATTTGCTCTTGCTCTATTTGTCAAGTATCACAAGGACACAGCTGAGCTTGGCCGAGAAATTGAACACGGCTGCTCAGATTCTGTGA 858 0.4522 MEASERTVLQFSSSSQTLSAKVHPLVVFNICDCYVRRPDQAERVIGTLLGFVLPDGTVDIRNSYAVPHNESLGQVALDIEYHHNMLISHQKVNPKEVIVGWYSTGLGVNGGSALIHEFYSREVPNPIHLTVDTGFTNGEGTIKAYVSHNLSLGDWQIAAQFQEIPLDLRMVEAERVGFDTLKETTVDKIPNDLEGMETSMERLLALIDEIYKYVEDVVEGRVVPDNNVGRFISHAVGSLPKLPPSAFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1175 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Lele28g1175 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Lele28g1175 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele28g1175 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 122 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele28g1175 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Lele28g1175 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 12 282 - -
Lele28g1175 285 FunFam Eukaryotic translation initiation factor 3 subunit F 8 186 - -
Lele28g1175 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lele28g1175 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1175 Lele-ChrLele28 7671369 7673891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1175 4 285 Eukaryotic Initiation Factors Gene Family AT2G39990 77.163 4.87e-159 442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g0899 27 16962499 16965313 Lele28g1175 28 7671369 7673891 ECH
Lele28g1175 28 7671369 7673891 Lele28g1175 28 7671369 7673891 ECH
Lele25g1181 25 7757183 7759972 Lele28g1175 28 7671369 7673891 hybridization