Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1169 ATGGTTGGGAAACCCACAAAGGCCGAGAAGAAGATCGCTTACGATGCCAAATTGTGCCAGCTTCTGGAGGAATACACCCAGATCCTTGTGGTGGCGGCCGACAATGTGGGATCCAACCAGCTTCAGAACATCAGGAGGGGTCTGCGTGGTGACTCGGTGGTGCTCATGGGTAAGAACACCATGATGAAGCGCTCTGTCAGGATTCATGCTGAGAACACCGGCAACAATGCCTTCCTCAATCTTATCCCTCTGCTTCAGGGCAACGTGGGGCTAATTTTCACCAAAGGAGACCTGAAGGAGGTTAGCGAGGAGGTTGCCAAGTACAAGGTTGGCGCTCCTGCCCGTGTGGGTTTGGTTGCTCCCATTGATGTCGTTGTTCCTCCTGGCAACACAGGGCTTGATCCCTCTCAGACATCTTTCTTCCAGGTGCTCAACATCCCTACAAAGATTAACAAGGGTACCGTGGAAATTATCACCCCTGTGGAACTTATTAAGAAGGGTGACAAGGTCGGCTCCTCAGAAGCTGCTCTGCTTGCAAAACTTGGGATTAGGCCCTTCTCATATGGGCTCGTGGTCCTATCTGTGTATGATAACGGTTCAGTGTTCAGCCCTGAGGTTCTTGATCTTACTGAAGATGACCTTGTTGGGAAATTTGCTACTGGTGTGTCCATGGTGACATCACTTTCTTTGGCTGTCTCATACCCAACAATTGCAGCTGCACCACATATGTTCATCAATGGCTACAAAAACGTGTTGGCTGTTGCAGTGGAGACTAGTTACTCTTACCCTCAGGCTGAGAAGGTTAAGGAGTACCTAGAGGATCCCAGCAAGTTTGCTGTTGCTGCTGTTGCGGCCGCTCCTGTTGCTGATTCGGGTGCTGCCCCAGCTGCTGCTGCAGAGGAGAAGAAGGAGGAGCCCGCTGAAGAATCTGATGATGACATGGGCTTCAGTCTGTTTGATTAA 963 0.5067 MVGKPTKAEKKIAYDAKLCQLLEEYTQILVVAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRSVRIHAENTGNNAFLNLIPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLVGKFATGVSMVTSLSLAVSYPTIAAAPHMFINGYKNVLAVAVETSYSYPQAEKVKEYLEDPSKFAVAAVAAAPVADSGAAPAAAAEEKKEEPAEESDDDMGFSLFD 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1169 320 Gene3D - 6 209 IPR043141 -
Lele28g1169 320 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Lele28g1169 320 MobiDBLite consensus disorder prediction 294 320 - -
Lele28g1169 320 CDD Ribosomal_P0_L10e 9 185 - -
Lele28g1169 320 PIRSF L10E 2 320 IPR030670 GO:0042254
Lele28g1169 320 MobiDBLite consensus disorder prediction 305 320 - -
Lele28g1169 320 Pfam 60s Acidic ribosomal protein 234 319 - -
Lele28g1169 320 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Lele28g1169 320 FunFam 60S acidic ribosomal protein P0 113 186 - -
Lele28g1169 320 Pfam Ribosomal protein L10 7 108 IPR001790 -
Lele28g1169 320 Gene3D - 114 185 IPR043164 -
Lele28g1169 320 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 4 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1169 Lele-ChrLele28 7636332 7638230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1169 1 319 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 83.750 0.0 515
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g1169 28 7636332 7638230 Lele25g1174 25 7663490 7666752 CCT
Lele28g1169 28 7636332 7638230 Lele26g1175 26 7632645 7636402 CCT
Lele28g1169 28 7636332 7638230 Lele27g0906 27 17017612 17020825 CCT
Lele28g1169 28 7636332 7638230 Lele28g1168 28 7618012 7621760 CCT
Lele27g0904 27 17001922 17003838 Lele28g1169 28 7636332 7638230 ECH
Lele28g1169 28 7636332 7638230 Lele28g1169 28 7636332 7638230 ECH
Lele25g1175 25 7701032 7702941 Lele28g1169 28 7636332 7638230 hybridization
Lele26g1176 26 7655894 7657806 Lele28g1169 28 7636332 7638230 hybridization