Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1156 ATGAGGATTACGTTGGACACAGAGGAGCCGAACTCGGAGCCTAGGCGCTCAACAACGCCCAAAGAAGTTGAATGGGTTCCACTTGAGAAACACGCGGTCTTTGTCGCCACCAATAACTCCATAGACGACGATTCCAGCGTTGCATTTTCCAGAAATCTCGTGGCCTGGGATGGATCCTCTCGTCTCTATTTCTGGGAACCTAAGACCAACTGCCTCCATCGTCTGTCTCTTCGGCTTGGCGAGCCTGAGCCTACTTCTGTACTTGCTGCTTCTCCTTCTAAGGTATTGCGAGCAGATGTGGAGATCAACTTTGCTATCCACAAAATCTCTATCAACAGGAATGGATCGGCATTACTTCTTTTTGGTTCTGAAAGACTGTGTGTTATGTATCTGTATGGACGTACATCCAGAAAGGATGTAAATTTGATTTGCAGGACTATTATGATCGGTTCACAAACATATTCCAAGAGTAGCAACGATATACGCTTGCTAAAAGCTTTATGGCATCCGTATAGTGATTGTCATGTGGGAATCCTTTCTTCTGACTCAGTTTTCAGGCTTTTTAATTTGGCCTTGGATCCTTTGCAACCTGAGCAAGAATATTATTTGCAGCCTGTGGATCCAGGCAGATCCAGAAATGCTTCATCAATGCGCCCAGCTGATTTTTCTTTTGGTGGTGACCACTTATGGGACAGGTTTAGCGTATTTATTTTGTTTGGTGATGGAGCTATTTACATCCTTTGCCCAGTTGTTCCATTTGAAAGTCTCTTCAAATCGGAATCTGTGCTAGAAATATACAATGATGCTCATACGTTTGGGCTCAAATCTGCAAACTCTAAAGCCGTTAGTAATTCAAAATTGGCAATCTCATGGTTGGAAGCAACATTCCCCGAGTTACAAAATCAAGAGACAGAAGAAAACATGTCTGTGTTAAGGGCTCATGCTTATGTTCAATTTGATGCATCTCTTACCCTGCAGGGACCTCTTCGAAGAGTAGGTCAGGGCGGGAATGAAGATTCAGTTGGTCGTAGTGCAGAATGTGAAGGCCGTGCAGGCAGTTTTCTTTATGATCTTGTAAGCAAAGACACAATATTGGTAACTTCTTGGAGTGGCGGGCAATTACAGATAGATGCTGTGGCTGATGAGATCCAGCCTGTGTGGAGTGCTGGTAGTCCTCCACGTGTTCGTGTTGATTCCGACGATCATATTCTTGGCCTTGCCATGATTTGTGAGTCAATAACCAGTGGCCTACAAGAGAAGCTTGATCATATGGTCTGGTTGGGCAATCCACCGCCACTGCTGAGACTGGCTATTGTTGACTTGGCTCTGCCTCGGAGAGTGGAAAGTGGTTATAATATTGCATTGTTTGTGGATCCTCTTATGCCAGAAAGAATATATTCCCTTCATGATGGAGGGATTGATTCAATAGTGTTGCATTTCCTTCCATTCACAAGCCAGGCAAATGGCAAGGATGATACAATGAGAACTCCTTCTGTGCATCCTGTTCTAAATACATGTCAGAGTGGGAGCACCACAGCATCTCCTCTCTGTGGTTTTGCATCTTTGTCAGATTCCTTTGGATATTCATGGATTGTGGCAGTCACTCTTTCTCAAGAGTGCATTGTGCTAGAGACAAAAACGTGGAACCTGTTGCTGCCACCAAACTTTGATATGGAGAAAATTCAATTAGAGGATGTATCAGAAGATAGAGACATACCAACTATCATTAGCAAAGAATTACTTACTGGGCCTAGGACGGTACTTGTTCCTCAAGCGTCTCCAAGCTTACGTTCTATTTCACCTGATTCAATTGAAGGCAGATCAGCATTGCATCAGTATTTCAAGCTTTTTCATGAAACGTATGTGGAGTATGCACATAAGGTGTACTTGGAACTCAAGCATCATGCTCCTCAGTTGAAGAAAATCGTTGATGACCAACATGCTCGCTTGGGTGATGCACAGCAGAAGCTTTTGAAAGTTGCGGAGAAGCAGCCACTATTAGTGGAAAGAATAGATCGTGCAGTTCAAATGCATAGGTCTTTGGAAGAGCGCTTGCAACAATTAAGGAACTTACCTGGTGCTCACAAAAAGCCATTATCTAAAGCCGAGCGACAATTCAAATCTGAACTAGACCACTTCAGGGAAGTTGAGTTGGATGCTTTGCATTCTTCTGTTGATGCTCTAAGTGCTAGGCTGAGGAGGTACATGCAAGCAACCAAAGCTCATAGCCCCCAGAGGCAAATAATAGGTAGGAAGAGTTATGTCGACAAGGCCCAGATATCAATGCTCAAATCTTCACTCAAAAAACTCTCACTCTTGAATAGTGAGAACTCGAAAAAGGTTAAGCTTGTTGAGTCTGCATTGAGAACACAGGAAAAAGGCGGCAGGGAATCAAGCCTTCCTCCTAAACCTTGA 2415 0.4377 MRITLDTEEPNSEPRRSTTPKEVEWVPLEKHAVFVATNNSIDDDSSVAFSRNLVAWDGSSRLYFWEPKTNCLHRLSLRLGEPEPTSVLAASPSKVLRADVEINFAIHKISINRNGSALLLFGSERLCVMYLYGRTSRKDVNLICRTIMIGSQTYSKSSNDIRLLKALWHPYSDCHVGILSSDSVFRLFNLALDPLQPEQEYYLQPVDPGRSRNASSMRPADFSFGGDHLWDRFSVFILFGDGAIYILCPVVPFESLFKSESVLEIYNDAHTFGLKSANSKAVSNSKLAISWLEATFPELQNQETEENMSVLRAHAYVQFDASLTLQGPLRRVGQGGNEDSVGRSAECEGRAGSFLYDLVSKDTILVTSWSGGQLQIDAVADEIQPVWSAGSPPRVRVDSDDHILGLAMICESITSGLQEKLDHMVWLGNPPPLLRLAIVDLALPRRVESGYNIALFVDPLMPERIYSLHDGGIDSIVLHFLPFTSQANGKDDTMRTPSVHPVLNTCQSGSTTASPLCGFASLSDSFGYSWIVAVTLSQECIVLETKTWNLLLPPNFDMEKIQLEDVSEDRDIPTIISKELLTGPRTVLVPQASPSLRSISPDSIEGRSALHQYFKLFHETYVEYAHKVYLELKHHAPQLKKIVDDQHARLGDAQQKLLKVAEKQPLLVERIDRAVQMHRSLEERLQQLRNLPGAHKKPLSKAERQFKSELDHFREVELDALHSSVDALSARLRRYMQATKAHSPQRQIIGRKSYVDKAQISMLKSSLKKLSLLNSENSKKVKLVESALRTQEKGGRESSLPPKP 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1156 804 MobiDBLite consensus disorder prediction 1 21 - -
Lele28g1156 804 PANTHER NUCLEOPORIN NUP84-RELATED 16 793 IPR037700 GO:0000055|GO:0000056|GO:0006913|GO:0017056
Lele28g1156 804 Coils Coil 671 691 - -
Lele28g1156 804 Pfam Nuclear pore component 452 782 IPR019321 -
Lele28g1156 804 Pfam Nuclear pore component 28 225 IPR019321 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1156 Lele-ChrLele28 7532033 7538068 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g1156 28 7532033 7538068 Lele25g1164 25 7577944 7579902 CCT
Lele28g1156 28 7532033 7538068 Lele26g1163 26 7550633 7553020 CCT
Lele28g1156 28 7532033 7538068 Lele27g0915 27 17100284 17102303 CCT
Lele28g1156 28 7532033 7538068 Lele28g1155 28 7527764 7528328 CCT
Lele28g1156 28 7532033 7538068 Lele28g1156 28 7532033 7538068 ECH
Lele25g1165 25 7582400 7588290 Lele28g1156 28 7532033 7538068 hybridization
Lele26g1164 26 7554550 7560622 Lele28g1156 28 7532033 7538068 hybridization