Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1155 ATGCTCATATCGCTTTTGCTCTTCTCTGCTCCTCTTCTTCTTGTTCTCGCCGATGCTCTTCTTCCTTCAGCTCTCCTCTCTGCACTCTCCCCTTCTTCTTTCTCTCTAGAAACTCTCTCTTCCCACCTCCAAAACTACGATTTCCGATACTCCCTCATCGATATTCCCCTCGTCTCCATCATAAGATCCCTTGTCATCTTCTGTGTTTATAGTTTCTGCGATGGGCCAAGGCTTTCGCGGGGGCCCTATTTGGGGATAACGACGATGTGCTCTGTTTCGTCTCTGATTTTCGTGTCTCTGAAAGCTGTGTATGTTTTCAGTCACCCAGATTCTTATCACGTGAGAACTTTCGAAATAGCTCTGTTCGTGATTTCTTGTGCTTTGGCTATTGGGCATATCGCCGTGGCTTACAGAACAAGTTGCAGAGAAAGACGAAAGCTTCTGGTGTACAAAATTGACGTTGAAGCTGTAAGTATCTTTATAGCCTAA 489 0.454 MLISLLLFSAPLLLVLADALLPSALLSALSPSSFSLETLSSHLQNYDFRYSLIDIPLVSIIRSLVIFCVYSFCDGPRLSRGPYLGITTMCSVSSLIFVSLKAVYVFSHPDSYHVRTFEIALFVISCALAIGHIAVAYRTSCRERRKLLVYKIDVEAVSIFIA 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1155 162 Pfam Cholesterol-capturing domain 37 129 IPR019498 -
Lele28g1155 162 PANTHER ALPHA/BETA HYDROLASE RELATED PROTEIN 1 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1155 Lele-ChrLele28 7527764 7528328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1155 1 157 Miscellaneous Gene Families AT1G80280 42.690 2.16e-29 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g1164 26 7554550 7560622 Lele28g1155 28 7527764 7528328 CCT
Lele27g0914 27 17091660 17097479 Lele28g1155 28 7527764 7528328 CCT
Lele28g1156 28 7532033 7538068 Lele28g1155 28 7527764 7528328 CCT
Lele25g1164 25 7577944 7579902 Lele28g1155 28 7527764 7528328 CCT
Lele26g1150 26 7400758 7412111 Lele28g1155 28 7527764 7528328 CCT
Lele27g0930 27 17240301 17251255 Lele28g1155 28 7527764 7528328 CCT
Lele28g1143 28 7406011 7410162 Lele28g1155 28 7527764 7528328 CCT
Lele28g1155 28 7527764 7528328 Lele28g1155 28 7527764 7528328 ECH
Lele25g1164 25 7577944 7579902 Lele28g1155 28 7527764 7528328 hybridization
Lele26g1163 26 7550633 7553020 Lele28g1155 28 7527764 7528328 hybridization