Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1151 ATGGCGATTAAGGCCAATAGAACGGTGGTTTCGGCTTGTCTTTTCTGGGTTTTCATTCTGTGCGCGACAATAGCATTGTTTCAGCTTAAACTGATAGAGAACGGGAGAGACCATTCGTCTCACTCCAAGGCCATCGAAACTGCGCACCGTTCGGAAAACCCAGCGGAAGAGAATTTGGAGGGAGTCACCCACAAGGTGTTTTTTGATATAGAGATCGATGGGAAACTTGCGGGTCGCGTATTCATGGGACTTTTTGGAGCAGTGGTTCCAAAAACTGTAGAAAACTTTCGAGCACTTTGTACTGGGGAGAAAGGCGTGGGAAAAAGTGGGAAGCCTCTTCATTACAAGGGAAGCACATTCCATAGGATAATACCCAGCTTTATGGTCCAAGGGGGTGATTTCACCCGTGGTGATGGACGAGGGGGAGAATCAATCTATGGTTCTAAGTTTGCTGATGAAAACTTCAAAGTGAAGCATAATGGACCAGGATACTTGTCGATGGCGAATGCGGGAACAGACACAAATGGCTCCCAATTTTTTATAACAACGATTAAAACTAGCTGGTTGGACGGCCGGCATGTTGTGTTTGGGAAGGTGCTTTCAGGGATGGATATTGTGTACAAGATCCAAGCGCAAGGAAGCGCTAATGGTGAGCCCAAAGGCAAGGTTCTTATACTTGATAGTGGCGAATTAACTTCATGA 702 0.4615 MAIKANRTVVSACLFWVFILCATIALFQLKLIENGRDHSSHSKAIETAHRSENPAEENLEGVTHKVFFDIEIDGKLAGRVFMGLFGAVVPKTVENFRALCTGEKGVGKSGKPLHYKGSTFHRIIPSFMVQGGDFTRGDGRGGESIYGSKFADENFKVKHNGPGYLSMANAGTDTNGSQFFITTIKTSWLDGRHVVFGKVLSGMDIVYKIQAQGSANGEPKGKVLILDSGELTS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1151 233 Gene3D - 53 233 IPR029000 -
Lele28g1151 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 163 178 IPR002130 GO:0000413|GO:0003755
Lele28g1151 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 178 190 IPR002130 GO:0000413|GO:0003755
Lele28g1151 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 84 99 IPR002130 GO:0000413|GO:0003755
Lele28g1151 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 132 IPR002130 GO:0000413|GO:0003755
Lele28g1151 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 191 206 IPR002130 GO:0000413|GO:0003755
Lele28g1151 233 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 67 230 IPR002130 GO:0000413|GO:0003755
Lele28g1151 233 SUPERFAMILY Cyclophilin-like 62 231 IPR029000 -
Lele28g1151 233 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 115 132 IPR020892 GO:0003755|GO:0006457
Lele28g1151 233 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 68 227 IPR002130 GO:0000413|GO:0003755
Lele28g1151 233 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 65 231 - -
Lele28g1151 233 FunFam Peptidyl-prolyl cis-trans isomerase 60 232 - -
Lele28g1151 233 CDD cyclophilin_ABH_like 64 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1151 Lele-ChrLele28 7487404 7493158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1151 78 203 U-box Gene Family AT5G67530 45.669 5.63e-25 100
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g1151 28 7487404 7493158 Lele25g1159 25 7521680 7524962 CCT
Lele28g1151 28 7487404 7493158 Lele27g0921 27 17141992 17145253 CCT
Lele27g0920 27 17133338 17136688 Lele28g1151 28 7487404 7493158 ECH
Lele28g1151 28 7487404 7493158 Lele28g1151 28 7487404 7493158 ECH
Lele25g1160 25 7533362 7535139 Lele28g1151 28 7487404 7493158 hybridization
Lele26g1158 26 7510919 7513554 Lele28g1151 28 7487404 7493158 hybridization