Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1149 ATGACGAATTCACTCCTCTTCTCCGTCAACGTCTGCCTCATCGCCTCCGTAACCCTCTTCTCTGCAATCCCCTTCATCCATTCTCTGGGTTCCGGAGCTACTCTTGCCGTAATCGATGACTCCGGCACCGTCTGTGGCATCGTGGCAGGGGAACGGACTCAGCGCATTGAATGCTACAGTCGCGGGCAGATCCTTCCTGTTACTCCTAACGTTTCGTTTTCGTCGATTTCCGGCGGGAGGAGCTACTTCTGCGGCCTTAGGTCCGGTAACTACAGTTTGCTCTGCTGGGACGCTGTTTCGTCCAATTCCAGTGGTCCCTTCCAAGGGAAGAGGCTTTACTCTAATTTTACTGTTCTGTTGGAGAATCTGGCGGTTGGGGGTACCCAAGTGTGCGCGACCGTCGTGGGTTCAGGCACTGTTCAGTGCTGGAGAACCAATGACATACCTCCGCCGGATCAATTTGCGACGATAACATCTGGGTCTGGCTTTTCTTGCGGGATCTTGAAGAATACTTCTCGGGTTCATTGTTGGGGAATGCAACCCCTTTCGGGTCAAATACTGAATGGATTCGGAGACATGCCCATGTTGAGTCTTGTCGCCGGCGATTCACATGTTTGTGGATTGAATTCAACAGGGTTTGTGGTGTGCGGAGGAAGTAACAGTTCTGGGCAGCTTAGTGTTCCCCAACAAGGTGGGCCTCTGGAATATTCTGGGTTGGCTCTCGGAGCTGAACATAGCTGCGCGATCAAACAGTCGAATCGTTCTGTTGTTTGCTGGGGAGGCGGCGGAGGGAAATTCTCGGCGAATGATACAGAACGAACATCTTTCGAGTTAATTGTTTCTGGCTCAAATTTTTCTTGCGGATTAGTCTCCGGCAATTTTTCTGTAATGTGCTGGGGACCTGGTTGGGCTAATAGTTCTGGCGAGCTTCCTTTACCTCCGATTCTCCCAGGGCCTTGTGTTCAATCTTCTTCGAATTCTAGCAATAGTCCGCCATCGAGATCATCCACCATTAGACGACAGGGCTCGAGGATAATGAGGCGCCAGAGGAGCGGAACGTCATCTACAAAACATCCTGATAGGGCAGAGGAATTCACTCTAGCCGAGCTTGTGGCAGCCACTAATAATTTTTCCCTTGAAGACAAGATTGGTGCTGGTAGTTTTGGTGTTGTGTACAGAGGCAAACTCGCTGATGGTCGTGAGGTGGCGATCAAGAGGGGTGAGATTGGTTCCAAGATGAAGAAATTTCAAGAGAAAGAGAGTGCATTTGAATCAGAACTCGCATTCTTGTCCCGTTTACATCACAAACACTTGGTCAGGCTAGTTGGTTTCTGTGAGGAAAAAGATGAGAGGCTCTTGGTGTATGAATACATGAAGAACGGAGCATTGCATGATCATTTGCATGCCAAGAACAATGTAGAAAAGAGTACTAGTTTCTTGAATTCGTGGAAAATGAGGATCAAGATCGCGCTTGATGCTTCTCGGGGGATCGAATATCTCCACAACTATGCAGTCCCACCCATAATTCACAGAGACATCAAGTCTTCCAACATTCTCCTCGATGCGAATTGGACGGCGAGAGTGTCCGATTTCGGATTGTCATTGATGGGTCCGGACTCTGACCACGATTATCGGCCAACAAAGGCAGCAGGCACCGTAGGATACATCGATCCCGAGTACTATGGTCTGAATGTCTTGACAGCTAAGAGTGATGTCTATGGTTTTGGAATAGTACTGCTAGAACTCTTAACTGGAAAGAGAGCTATATTCAAGGATGGTGAAAATGGTGGCACCCCAGTGAGTTTGGTGGACTTTGCAGTGCCTGCCATAATGGCCAACGAATTGCCCCGGATTCTGGACGCGAGGGTTGGGCCACCGGAGATGAACGAGGCGGAGGCGGTGGAGCTGGTGGCGTATACTGCAATGCACTGCGTGCATTTGGAAGGGAAGGACAGACCAACAATGACTGACATTGTGGCCAATCTGGAGAGAGCTTTGGCTCTTTGTGATAGTAGTCATGGCAGCATCTCAAGTGGCACAATCTCTATTGTTTCAGAATGA 2061 0.4939 MTNSLLFSVNVCLIASVTLFSAIPFIHSLGSGATLAVIDDSGTVCGIVAGERTQRIECYSRGQILPVTPNVSFSSISGGRSYFCGLRSGNYSLLCWDAVSSNSSGPFQGKRLYSNFTVLLENLAVGGTQVCATVVGSGTVQCWRTNDIPPPDQFATITSGSGFSCGILKNTSRVHCWGMQPLSGQILNGFGDMPMLSLVAGDSHVCGLNSTGFVVCGGSNSSGQLSVPQQGGPLEYSGLALGAEHSCAIKQSNRSVVCWGGGGGKFSANDTERTSFELIVSGSNFSCGLVSGNFSVMCWGPGWANSSGELPLPPILPGPCVQSSSNSSNSPPSRSSTIRRQGSRIMRRQRSGTSSTKHPDRAEEFTLAELVAATNNFSLEDKIGAGSFGVVYRGKLADGREVAIKRGEIGSKMKKFQEKESAFESELAFLSRLHHKHLVRLVGFCEEKDERLLVYEYMKNGALHDHLHAKNNVEKSTSFLNSWKMRIKIALDASRGIEYLHNYAVPPIIHRDIKSSNILLDANWTARVSDFGLSLMGPDSDHDYRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGFGIVLLELLTGKRAIFKDGENGGTPVSLVDFAVPAIMANELPRILDARVGPPEMNEAEAVELVAYTAMHCVHLEGKDRPTMTDIVANLERALALCDSSHGSISSGTISIVSE 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1149 686 Gene3D Phosphorylase Kinase; domain 1 342 457 - -
Lele28g1149 686 MobiDBLite consensus disorder prediction 319 340 - -
Lele28g1149 686 SMART serkin_6 377 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1149 686 Pfam Protein kinase domain 378 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1149 686 SUPERFAMILY RCC1/BLIP-II 28 262 IPR009091 -
Lele28g1149 686 Gene3D Transferase(Phosphotransferase) domain 1 458 675 - -
Lele28g1149 686 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 195 672 IPR044815 GO:0004674
Lele28g1149 686 FunFam Serine/threonine-protein kinase-like protein CCR4 458 679 - -
Lele28g1149 686 ProSitePatterns Protein kinases ATP-binding region signature. 383 405 IPR017441 GO:0005524
Lele28g1149 686 FunFam serine/threonine-protein kinase-like protein CCR1 346 457 - -
Lele28g1149 686 MobiDBLite consensus disorder prediction 315 360 - -
Lele28g1149 686 ProSiteProfiles Protein kinase domain profile. 377 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1149 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Lele28g1149 686 SUPERFAMILY Protein kinase-like (PK-like) 354 662 IPR011009 -
Lele28g1149 686 CDD STKc_IRAK 383 664 - -
Lele28g1149 686 Gene3D - 191 341 IPR009091 -
Lele28g1149 686 Gene3D - 21 190 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1149 Lele-ChrLele28 7475881 7478271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1149 341 686 Receptor kinase-like Gene Family AT3G55950 77.031 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Lele28g1149 Pkinase 1.3e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1157 25 7499948 7502353 Lele28g1149 28 7475881 7478271 CCT
Lele25g1147 25 7390741 7402155 Lele28g1149 28 7475881 7478271 CCT
Lele25g1157 25 7499948 7502353 Lele28g1149 28 7475881 7478271 hybridization
Lele26g1156 26 7484351 7486741 Lele28g1149 28 7475881 7478271 hybridization