Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1146 ATGCCTACGCCGGTCGGAGCAGCCAAGCAATGCTTGACGCCGGATGCAGCTCGCGCTCTCGAAGAAGCTGTCTCCGTCGCCCGCCGTCGGGGGCACCCCCAGACCACCTCGCTACATGCTGTCTCTGCCTTGCTTTCGTTGCCGTCGTCTACCTTACGTGACGCCTGTGCTTGTGCCCGTAACTGTGCCTACTCGCCTCGGCTTCAATTCAAGGCGTTAGAGCTGTGCCTGAGCGTATCGCTCGACCGGGTCCCCTCGACTCAACTCGCCGACGACCCGCCAGTCTCCAACTCGCTCATGGCCGCCATCAAGCGCTCCCAGGCGAGTCAGAGAAGGCAGCCTGAGAATTTCAACATTTACCATCAAATCTCGCAGCAGCCTACTTCGGTTTCTTGTGTGAAAGTTGAGCTTCAACATTTGCTATTATCGATTCTCGACGACCCGGTCGTGAGCCGGGTATTCGGAGAAGCGGGTTTTCGAAGCTCCGAAATTAAACTTGCTATTCTTCGTCCTCTTCCACAGTTACTCAGGTACTGTCGCTCCAGAGTCCCCCCTATATTCCTCTGCAATTTGACGGAGCATCCGGACCCGGGTCGTCGGAGCTTCAGTTTCCCGTTTCCTGGGTCTTTCGGAACCTGCGACGGCTGCGCTGAGAATTACAAAAGAATCGGAGATGTGCTTTGCAGGAGCAGAGGGAAGAATCCCCTGCTCCTGGGTGTATGCGCAGATGATGCTCTGTGTAGTTTCACAGAAGATGTTAATAAACAAAGAGACGGTGCTTTGCCGGTGGGGTTATCTGGATTGCGTGTTATGTGCATAGGAAAAGATATTTCCAAGTTCGTCTTTGAGAATTGCGATAACGAGACATTCAATTCAAAGCTTAAGGAGATTACTCAAACGGAAGAGAAGGGAGTAGGACCTGGTTTGGTTGTGAATTTTGGGGACTTGAAGCCTTTGATTGATGAGAATGCCTCAAATGAAGCAGTGAATTATATTGTTGCTGAATTGGCGAAGTTGTTGGAGCTTAATTATGGCAAGTTTTGGTTGATGGGAGCTGCGGCGAGCTATGAGTGCCATCTGAAATTTATGGGAAGGTTTCCATCCATTGAGAAGGATTGGGACTTGCAGCTTCTGCCCATCACGTCTACTCGGCCTCAGGATGAATCATGTCAGAGGCCTAGATACAGCTTAATGGATTCATTTGTCCCATTTGGTGGCTTGTTTTCTTCACCTTCTGATTTGAAAGGTGGCTCATATTATTGTGTTCCCCGTTGCCTTCATTGTGGTGAAAGTTGTGTGCAAGAAGTGCTTCCAGCTTCAAATGAGAGGCTGTCTGCTTCGGTAGCTGATCCTTACCAATCTAATTTACCTCCATGGTTGTGGACTGCTGACCTTGGCATAAAAAAAAGGTTGAATGATAAGGTTGTTGAACTGCAGACAAAAGAAGATGGTGTTCGGCTGGATACTAGTGAATCTGGGCCTAACGAGAAATTGGATGAGACATGCCAGCATCTGCATAATACCCAGCAATTCTCTGAAGCGATTCCTTGTCAAACTGCCATGAGTCCCCGATGCTCTGATGGTAAAAAGGAAGATACTGACAATCGCAGCAACAAAATTTCAGATGCATCACCTAGTATGCACATTGATCTCAATTCAAGCGCGCCCATTGCAGAAGAGATGATTTCTACATCATATTCAAGTATTCATGTTCCTGTGGTTTCCAAAGCAAATCAGGAGAAACATATTTCTAAGAAAGCAAAAGATCTCGAGTCAGGTGACCTAAGATCATGCAACATGTCCAATTCAAGCATGTGCGATGGTAGCCAATTGTCTCCCTCATCTGTGACTTCTGTAACCACAGATCCAGGTATAGGAATTTGCTTTTCTCCTACAAGGAACAAATCTGAGAAACCAACTATGGGGGGTCCAAAGGAAATTGCGAGTCCCTTTTGTTCAAACTATAATTTAGTTAACAGGGATGTCTTTAAGCATCCAGCCCAGTCTTCATCCTGCTTAAGTTCTGACCATTCTGGACAATATGATCTAAGAAATCCTAAAATTCTTTTTGAAACTCTTGCCAAAAAGGTTACCTGGCAGGATGAAGCCTTACAAAGCATTGTAAAAACAATATCTTACTGTGATACAAGCAGGGGCAAATGCCAAGGAGCAAATCGACGAGGGGGCATATGGATGAATTTTGTAGGAACTGATAGGTTGGGTAAGAAGAAAATTGCTGTTTCTCTGGCTGAGATTTTGTATGGAAGTCAGGAAAGCTTCCTTTTTGTGGATCTAAATTGTGAGGAAATAAAAGGACGTGATGTGAAATTTAGAGGAAAGACTATTCTTGATGTTTTAGTTGGGGAGTTGTGCAAAAATCCATTGTCTGTGGTTTTCCTTGACAATGTAGACATGGCTGATATGATGGTTCAGAATAGTTTATCTCAAGCTATCAAGAATGGAAAAATTATAGACTCGTGTGGGAGAGAAGTTAGTATAAACAATACAATAATTGTGACATCTTTCTCAGTTCAAGAAGATAATTGGAATTGCACACTAAAGACAGAATTCTCCGGCTATTCTGAGGAAAGAGTATCAAGGACAAAAGGGGTACCAATCATGATAAAAGTTGAACATGTAATTGGAGACATCAGAAGTCCAAGCGTTTCTGTACTTAAATGTTCAACAGAGGGCGTTCCCGATCCAATCCTTGTAAATAAAAGAAAGCTGAGTTGTGACAATGCCCTTAATGGTCAGCACAAAGCCTCAGAAATGGCTAAAAGGGCTCACAAAATTTCAAATTGTTTTCTAGATTTGAACGTCCCGGCAGAAGAGAATGAACTGCAATTCATGGATTATGGGAACCCTGAAGGTGTCTCAACTGCAACACAAAACCCCTGGCTGCAAGAATTGTATAATCAGGTTGATGAAACAATCATCTTGAAACCATACAATTTTGATGCACTTGCAGATAGAGTGTTAGAAATCATCAGAAGGATCTTCCACAAGATTCTCGGATCCGAGTGCTCACTACAGATAGAGTCAGAAGTCATGGAACAGTTACTTGCAGCTGCATATGTCTCAGAAGGGGACGTGGCAGTGGAGGATTGGGTGAAGCAAGTTCTTAGTGGAGGACTTACAGAGATACAGAGAAGGTACAGCCTCTCTGCTCGTTCTATCGTGAAACTTGCTACATATCAGGAGCAAGCCCCTGATGTCAACAACTTGGATACACTGATCATGGGAAGTTCATCATCTATGTTCCGGATAATGTTAAAGGAAAAGTTTTCTTTGCCTTTGCAGTCTCTCATTGATTTTAGATCAACAGGTGGTATTGAGTCAATTGTTTTGAGCTTCGTATGGACTTCCAATTGA 3375 0.4441 MPTPVGAAKQCLTPDAARALEEAVSVARRRGHPQTTSLHAVSALLSLPSSTLRDACACARNCAYSPRLQFKALELCLSVSLDRVPSTQLADDPPVSNSLMAAIKRSQASQRRQPENFNIYHQISQQPTSVSCVKVELQHLLLSILDDPVVSRVFGEAGFRSSEIKLAILRPLPQLLRYCRSRVPPIFLCNLTEHPDPGRRSFSFPFPGSFGTCDGCAENYKRIGDVLCRSRGKNPLLLGVCADDALCSFTEDVNKQRDGALPVGLSGLRVMCIGKDISKFVFENCDNETFNSKLKEITQTEEKGVGPGLVVNFGDLKPLIDENASNEAVNYIVAELAKLLELNYGKFWLMGAAASYECHLKFMGRFPSIEKDWDLQLLPITSTRPQDESCQRPRYSLMDSFVPFGGLFSSPSDLKGGSYYCVPRCLHCGESCVQEVLPASNERLSASVADPYQSNLPPWLWTADLGIKKRLNDKVVELQTKEDGVRLDTSESGPNEKLDETCQHLHNTQQFSEAIPCQTAMSPRCSDGKKEDTDNRSNKISDASPSMHIDLNSSAPIAEEMISTSYSSIHVPVVSKANQEKHISKKAKDLESGDLRSCNMSNSSMCDGSQLSPSSVTSVTTDPGIGICFSPTRNKSEKPTMGGPKEIASPFCSNYNLVNRDVFKHPAQSSSCLSSDHSGQYDLRNPKILFETLAKKVTWQDEALQSIVKTISYCDTSRGKCQGANRRGGIWMNFVGTDRLGKKKIAVSLAEILYGSQESFLFVDLNCEEIKGRDVKFRGKTILDVLVGELCKNPLSVVFLDNVDMADMMVQNSLSQAIKNGKIIDSCGREVSINNTIIVTSFSVQEDNWNCTLKTEFSGYSEERVSRTKGVPIMIKVEHVIGDIRSPSVSVLKCSTEGVPDPILVNKRKLSCDNALNGQHKASEMAKRAHKISNCFLDLNVPAEENELQFMDYGNPEGVSTATQNPWLQELYNQVDETIILKPYNFDALADRVLEIIRRIFHKILGSECSLQIESEVMEQLLAAAYVSEGDVAVEDWVKQVLSGGLTEIQRRYSLSARSIVKLATYQEQAPDVNNLDTLIMGSSSSMFRIMLKEKFSLPLQSLIDFRSTGGIESIVLSFVWTSN 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1146 1124 SUPERFAMILY Double Clp-N motif 12 117 IPR036628 -
Lele28g1146 1124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 686 1032 IPR027417 -
Lele28g1146 1124 ProSiteProfiles Clp repeat (R) domain profile. 7 174 IPR004176 -
Lele28g1146 1124 MobiDBLite consensus disorder prediction 520 549 - -
Lele28g1146 1124 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1051 - -
Lele28g1146 1124 Pfam Clp amino terminal domain, pathogenicity island component 135 169 IPR004176 -
Lele28g1146 1124 Gene3D - 10 170 IPR036628 -
Lele28g1146 1124 CDD AAA 741 841 - -
Lele28g1146 1124 Gene3D - 660 879 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1146 Lele-ChrLele28 7438307 7444097 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1154 25 7459199 7465760 Lele28g1146 28 7438307 7444097 CCT
Lele25g1142 25 7369286 7369816 Lele28g1146 28 7438307 7444097 CCT
Lele28g1146 28 7438307 7444097 Lele25g1170 25 7632686 7636571 CCT
Lele28g1146 28 7438307 7444097 Lele26g1169 26 7602383 7606402 CCT
Lele28g1146 28 7438307 7444097 Lele27g0909 27 17046302 17052013 CCT
Lele28g1146 28 7438307 7444097 Lele28g1162 28 7585376 7589397 CCT
Lele27g0927 27 17204610 17210856 Lele28g1146 28 7438307 7444097 ECH
Lele25g1154 25 7459199 7465760 Lele28g1146 28 7438307 7444097 ECH
Lele26g1153 26 7446381 7451113 Lele28g1146 28 7438307 7444097 ECH
Lele28g1146 28 7438307 7444097 Lele25g1154 25 7459199 7465760 ECH
Lele28g1146 28 7438307 7444097 Lele26g1153 26 7446381 7451113 ECH
Lele28g1146 28 7438307 7444097 Lele27g0927 27 17204610 17210856 ECH
Lele28g1146 28 7438307 7444097 Lele28g1146 28 7438307 7444097 ECH
Lele01g1219 01 7353530 7358347 Lele28g1146 28 7438307 7444097 ECH
Lele02g1489 02 19089372 19094181 Lele28g1146 28 7438307 7444097 ECH
Lele03g1232 03 7316094 7320925 Lele28g1146 28 7438307 7444097 ECH
Lele04g1474 04 19938523 19943327 Lele28g1146 28 7438307 7444097 ECH
Lele28g1146 28 7438307 7444097 Lele01g1219 01 7353530 7358347 ECH
Lele28g1146 28 7438307 7444097 Lele02g1489 02 19089372 19094181 ECH
Lele28g1146 28 7438307 7444097 Lele03g1232 03 7316094 7320925 ECH
Lele28g1146 28 7438307 7444097 Lele04g1474 04 19938523 19943327 ECH
Lele25g1154 25 7459199 7465760 Lele28g1146 28 7438307 7444097 hybridization
Lele26g1153 26 7446381 7451113 Lele28g1146 28 7438307 7444097 hybridization