Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1144 ATGCCACCCCCATATTTAGATAAAGTCCCGAGTTTTCTCAGAGAGGACTTCGATTTGTGCGGTGTCTCAAAAGCTGAACTTTCTCCCTCTAATAACGACATGGATAGCGAGTTTCGGAAGCAGAATTGCGGTGTTCTCTGTAACATCTCAAGTCTGCTCGAGCTGTCTGCGACCGATGATCTCGAAACTTTCATAAGGGAAGTAGAAGAGAAGGGTTCTGATGTGAACGAGGAAAGCTTTTGGTATGGAAGAAGAATTGGATCAAAGAAGATGGGATTGGAAAAGAGGACGCCTCTCATGGTTGCTTCTTTATTTGGAAGCACCGAGGTGCTGAAGTATATTATTGAAACAGGCAGAGCTGATGTAAACAGGGCTTGTGGTTCTGATAAGGCCACGGCTCTCCATTGTGCTGTTGCCGGTGGCTCTGAATCCTCACTTCAGATTGTTAAGCTCTTGCTTGATGCAAAGGCAGATCCTGATTGCCTTGATGCTAGCGGAAATGAGCCTGTTAGTTTGGTTGCTCCTGCCTTTAGTTCTTCATCTAACTTGCGAAGGAAGGCGATGGAGTCGTTGCTGAGAGGTGATGGATTAGGAGGAGGAAGTCATCAAATTATCGAACAGGAGGCGGAACAACAGAAAGCTACAGCGTCTTTATCATCAAAAGAATCAGCAGAGAAGAAAGAATATCCTGTTGATATATCTTTGCCTGACATAAACAATGGTATATATGGAACGGATGAGTTCAGGATGTACAGTTTCAAGGTGAAGCCATGTTCAAGGGCATACTCTCATGACTGGACTGAGTGTCCATTTGTTCATCCCGGGGAGAATGCGAGGAGGAGGGATCCACGGAAGTATCCTTACAGCTGCGTTCCTTGCCCAGAGTTCCGCAAGGGAAGCTGCCCCAAGGGGGATGCCTGTGAGTATGCTCACGGTGTTTTCGAGTCATGGCTCCATCCTGCTCAATACCGAACAAGGCTTTGCAAGGACGAGACCGGTTGCTCCCGAAAAGTCTGTTTCTTTGCTCACAAACCTGAAGAGTTGCGTCCCGTGTATGCTTCCACCGGTTCAGCAATGCCCTCACCAAAATCCTTTTCAGCTAGTGGGCTCGACACGACTGTTATGAGTCCATTAGCTCTGAGCTCTTCATCTTTACCAATGTCTACTGTTTCAACACCGCCCTTGTCTCCTTTGGCTGCTTCATCTCCTAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACCTCACCCTGCCATCCTTGCAGCTCCCGGGTAGCCGGCTGAAGGCGGCCTTAAGTGCTAGGGATCTTGATTTGGAGATGGAACTGCTTGGGCTAGAAAGTCCGGCCAACCAGCAGCAGCGGTTGATAGAAGAGATAGCTCGAATCTCTTCCCCATCTTTCCGGAACAAAGAATATAGTAGGATAGGTGATTTGAAGCCAACTAACCTCGATGACCTTCTGGGATCTGTTGATCCTTCTGCTCTTTCTCAATTTCATGGACTTTCGTCACAACCTTCAATGGCTACTCAGCTGCAATCTCCCAATGGGCTTAAGATGCACCAAAACATGAACCACCTTCGTGCAAGCTATCCCACCAACCTTCCTTCCTCTCCGACAAGAAATTCATTGGGCTTAGGGTCTGATTCTTCGTTTGCTGTGGCAGCCTCCAGATCTGCAGCGTTTGCAAAGCGAAGTCAAAGTTTTATGGATCGCGGGGCGATGTCACCCCACCATTTTGGGCAATCTGCACCCTCTGACGGTGCCTGTAGGGTTTCTTCTGCACTTTCAGATTGGAGATCCCCTGATGGAAAACTGGATTGGGGTATGAATGGAGATGAGCTGAACAAGCTGAAGAAATCTGCTTCTTTCGGGTTCAGAAACAATGGAAACGCTAACACCACCGTGGCACGGTCTGAAAATTTTGAGCCAGACGTATCGTGGGTTAATTCGTTGGTTAAAGATGTTCCCTCTGAGAAGCAGCAGCAGCAATTTGATCCCAGTAGAGAAATGCTTTCACCATGGGTGGAGCAGCTGTATAGAGAACACGAGCAGATAGTTGCATAA 2064 0.4767 MPPPYLDKVPSFLREDFDLCGVSKAELSPSNNDMDSEFRKQNCGVLCNISSLLELSATDDLETFIREVEEKGSDVNEESFWYGRRIGSKKMGLEKRTPLMVASLFGSTEVLKYIIETGRADVNRACGSDKATALHCAVAGGSESSLQIVKLLLDAKADPDCLDASGNEPVSLVAPAFSSSSNLRRKAMESLLRGDGLGGGSHQIIEQEAEQQKATASLSSKESAEKKEYPVDISLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCPKGDACEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSFSASGLDTTVMSPLALSSSSLPMSTVSTPPLSPLAASSPKSGSLWQNKINLTLPSLQLPGSRLKAALSARDLDLEMELLGLESPANQQQRLIEEIARISSPSFRNKEYSRIGDLKPTNLDDLLGSVDPSALSQFHGLSSQPSMATQLQSPNGLKMHQNMNHLRASYPTNLPSSPTRNSLGLGSDSSFAVAASRSAAFAKRSQSFMDRGAMSPHHFGQSAPSDGACRVSSALSDWRSPDGKLDWGMNGDELNKLKKSASFGFRNNGNANTTVARSENFEPDVSWVNSLVKDVPSEKQQQQFDPSREMLSPWVEQLYREHEQIVA 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1144 687 SUPERFAMILY Ankyrin repeat 64 171 IPR036770 -
Lele28g1144 687 ProSiteProfiles Ankyrin repeat region circular profile. 129 163 - -
Lele28g1144 687 FunFam Zinc finger CCCH domain-containing protein 66 245 313 - -
Lele28g1144 687 Pfam Ankyrin repeats (3 copies) 87 161 IPR002110 GO:0005515
Lele28g1144 687 ProSiteProfiles Zinc finger C3H1-type profile. 287 314 IPR000571 GO:0046872
Lele28g1144 687 SMART ANK_2a 94 124 IPR002110 GO:0005515
Lele28g1144 687 SMART ANK_2a 129 161 IPR002110 GO:0005515
Lele28g1144 687 ProSiteProfiles Ankyrin repeat profile. 129 164 IPR002110 GO:0005515
Lele28g1144 687 SMART c3hfinal6 287 313 IPR000571 GO:0046872
Lele28g1144 687 SMART c3hfinal6 322 345 IPR000571 GO:0046872
Lele28g1144 687 Gene3D - 288 350 - -
Lele28g1144 687 Gene3D - 49 192 IPR036770 -
Lele28g1144 687 PANTHER UNKEMPT FAMILY MEMBER 54 655 IPR045234 -
Lele28g1144 687 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 292 312 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1144 Lele-ChrLele28 7414996 7418412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1144 49 654 C2H2 Transcription Factor Family AT5G12850 42.025 1.18e-142 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele28g1144 Ank_4 6.1e-08 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1152 25 7432748 7434736 Lele28g1144 28 7414996 7418412 hybridization
Lele26g1151 26 7417367 7420444 Lele28g1144 28 7414996 7418412 hybridization