Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1139 ATGGCGGCCGCGAATGCTCCGATCGCCATGAGAGAGGCCCTAACTCTGCCAAGCGTGGGCATCAATCCGCAATTCATCACTTTTACGCATGTGACGATGGAGTCTGATAAGTACATATGCGTTCGAGAAACTTCTCCGCAGAATAGCGTGGTTATAATTGATATGAGCATGCCGATGCAACCTTTGAGAAGGCCCATTACTGCTGATTCGGCTCTTATGAATCCGAATTCTAGAATCCTTGCTTTAAAAGCCCAACTTCAAGGAACAACTCAGGATCACCTACAAATATTTAATATCGAGATGAAAACCAAGATGAAATCTTATCAGATGCCTGAGCAGGTAGTCTTTTGGAAGTGGATTACCCCAAAGATGTTGGGCATTGTGACGCAGACCTCAGTATTCCACTGGTCAATAGAAGGTGACACTGAACCTGTCAAGATGTTTGAGAGAACAGCAAATTTGACAAACAACCAAATTATTAATTATCGATGTGACTCTACAGAAAAATGGTTGGTCTTGATTGGTATTGCTCCTGGTTCCCCGGAGAAGCCACAATTGGTCAAAGGGAACATGCAACTTTTCTCTGTGGACCAGCAGCGCAGTCAAGCTCTTGAAGCACATGCTGCAGCATTTGCCCAATTTAAAGTTCCTGGAAATGAAAATCCATCTGTTTTGATTTCGTTTGCCACAAAGACGTTCAATGCTGGTCAATTATTATCCAAGTTGCATGTTATTGAGCTTGGTGCACAGCCAGGGAAACCATCGTTCACAAAGAAACAGGCAGATCTTTTCTTTCCCCCAGATTTTGCTGATGACTTTCCTGTTGCTATGCAGATATCCCACAAATTCAATTTGATTTACGTGATCACCAAGCTTGGACTACTGTTTGTTTATGACTTGGAGACCGCTGCGGCAGTATATAGGAATAGAATTAGTCCAGATCCAATATTTTTGACGTCAGAAGCTTCATCAGTTGGAGGCTTTTATGCCATTAACAGGAGAGGGCAAGTGTTATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGCCAATTAAACAACTTGGAGCTTGCGGTTAACCTGGCCAAAAGAGGAAATCTTCCTGGTGCTGAGAAGCTGGTTGTGGAGCGTTTCCATGAACTGTTTGCCCAAACAAAGTACAAAGAAGCAGCTGAGCTTGCTGCTGAATCTCCACAAGGAATCCTCCGTACACCCGAGACAGTTGCCAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACTCCTCCGCTGTTGCAGTATTTTGGGACTCTTTTAACAAAAGGAAAGCTGAATGCCTTTGAATCATTGGAATTGTCACGACTTGTTGTGAACCAGAACAAGAAAAATCTGTTGGAGAATTGGTTGGCAGAAGACAAACTAGAATGCAGTGAGGAGCTTGGAGATCTTGTTAAGACTGTGGACAACGATCTTGCTTTAAAAATATATATCAAAGCCAGAGCTACTCCTAAAGTTGTTGCTGCTTTTGCTGAGAGAGGGGAGTTCGATAAAATCCTGATCTATTGTAAGCAGGTCGGTTACACACCTGACTACCTGTTCCTCTTGCAAACAATTCTCCGGACAGACCCTCAGGGTGCTGTTAACTTTGCATTAATGATGTCTCAAATGGAGGGAGGTTGCCCAGTTGATTATAATACCATAACTGATCTGTTTCTTCAGAGGAATCTGATCCGTGAGGCAACAGCTTTTCTCTTGGATGTGTTGAAGCCAAATCTTCCAGAACATGGGTACCTTCAAACAAAGGTGTTGGAGATAAATCTGGTAACTTTCCCAAATGTAGCTGATGCAATTTTGGCAAATGGCATGTTCAGCCATTACGACCGTCCTCGTATTGCTCAGCTTTGTGAAAAAGCTGGTCTTTACATCCGAGCTTTGCAACATTACTCAGAGTTGCCAGATATTAAGCGTGTAATTGTGAATACGCATGCAATTGAGCCACAGGCACTTGTAGAGTTTTTTGGTACTCTGTCACAAGAATGGGCATTAGAGTGCATGAAAGATCTTCTGACGGTCAATCTTAGAGGCAACCTGCAGATAATTGTGCAGGTTGCAAAAGAATACTGTGAACAAATGGGAATTGATTCCTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGACTGTACTTTTTCCTGGGGTCATATTTAAGCTCCAGTGAGGATCCTGACATTCACTTTAAGTACATAGAGGCTGCTGCAAAGACTGGACAAATCAAAGAGGTGGAGCGCGTGACTAGAGAATCAAATTTCTATGATCCTGAGAAAACAAAGAACTTTCTAATGGAAGCCAAGCTTCCTGATGCACGTCCTTTAATAAATGTTTGTGATCGTTTTGGATTTGTTCCCGATCTAACACATTATCTATACACAAGCAACATGCTCCGTTACATTGAAGGATATGTTCAGAAGGTGAACCCAGGGAATGCTCCTTTAGTTGTTGGACAGCTGCTTGATGATGAGTGTCCAGAAGATTTTATCAAAGGCTTGATCCTCTCTGTTCGTTCTCTACTTCCAGTGGAGCCCCTTGTGGAGGAATGTGAGAAGAGGAATCGGCTTCGATTGCTCACCCAGTTCTTGGAGCATCTTGTGAGTGAGGGAAGCCAGGATGTGCATGTCCACAATGCTCTGGGTAAAATTATCATTGACAGTAACAACAATCCAGAGCATTTTCTAACCACCAATCCGTACTACGATTCTCGAGTTGTGGGCAAATATTGTGAGAAACGTGACCCTACCTTAGCAGTTGTGGCTTACCGGCGAGGACAATGTGATGATGAGCTTATCAATGTAACAAATAAAAATTCCTTGTTCAAACTACAAGCCAGATATGTGGTTGAGAGGATGGAACCTGATCTTTGGGAGAAAGTTCTTAACCCTGACAATGAGTATAGAAGGCAACTTATTGATCAGGTTGTGTCCACTGCTTTGCCTGAAAGCAAGAGTCCTGAACAAGTTTCTGCAGCTGTTAAGGCTTTCATGACAGCTGATTTGCCTCATGAGTTGATTGAACTTCTTGAGAAGATTGTGCTTCAGAATTCTGCATTCAGTGGAAACTTCAACTTGCAAAATCTTCTTATTTTGACAGCCATAAAGGCCGATCCATCCAGAGTCATGGACTACATAAACAGACTGGATAACTTTGATGGGCCTGCAGTTGGAGAAATGGCTGTAGAAGCTCAGTTGTATGAGGAAGCTTTTGCAATATTTAAGAAGTTCAACTTGAATGTCCAAGCAGTCAATGTCTTGTTAGATAATATTCATAGCATTGATAGAGCTGTGGAGTTTGCTTTCCGAGTTGAAGAAGATGCTGTTTGGAGCCAAGTGGCTAAGGCTCAACTCAGGGAAGGGCTTGTAAGTGATGCAATTGAGTCATTTATTCGAGCAGATGATGCTACACAATTTCTGGATGTTATTCGTGCTGCTGAAGATGGCAATGTTTACCATGACTTGGTGAAATACTTGCTTATGGTAAGGCAAAAGGTGAAAGAACCCAAGGTAGACAGTGAGCTTATTTATGCATATGCAAAGATTGATAGGCTCAGTGAAATTGAGGAGTTCATCCTTATGCCGAATGTGGCTAATCTGCAAAATGTTGGTGACCGGTTATATGATGAAGCCTTATATGAGGCTGCAAAAATCATATTTGCCTTTATATCTAACTGGGCCAAGTTGGCTGTCACGCTAGTGAAGTTGAAACAATTCCAAGGTGCTGTTGATGCAGCAAGGAAAGCGAACAGTTCAAAAACATGGAAGGAAGTCTGCTTTGCTTGTGTTGATGCTGAGGAGTTTCGTTTGGCTCAAATATGTGGGCTCAACATTATTATTCAGGTGGATGACTTGGAAGAGGTCAGTGAATATTACCAAAATAGAGGTTACTTCAATGAGCTCATTTCTCTCATGGAGAGTGGTTTGGGATTAGAACGGGCACATATGGGTATCTTCACCGAGCTGGGAGTTCTATATGCTAGATATCGTCATGAGAAGCTTATGGAACACATTAAACTCTTCTCAACACGCCTCAATATTCCGAAACTCATCAGAGCTTGTGATGAACAACAGCACTGGAAGGAACTGACCTATTTGTATATCCAATATGATGAGTTTGATAATGCTGCAACTACCATCATGAACCATTCTCCTGAAGCATGGGATCACATGCAGTTCAAAGATGTCATTGTCAAAGTTGCTAATGTTGAATTATATTATAAGGCTGTTCACTTCTATTTGCAAGAGCATCCTGATCTCATTAATGATGTCCTGAATGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTGGACATAATGCGAAAGGCTGGTCACCTGCGTCTTGTGAAGCCATACATGGTTGCAGTTCAGAGCAACAATGTTTCTGCTGTTAATGAAGCCTTGAATGAGATATATGTTGAGGAGGAAGACTATGATAGATTGCGTGAATCAATTGATTTGCACGATAATTTTGATCAAATAGGTCTTGCACAGAAGATTGAGAAGCATGAGCTTCTTGAGATGAGACGTGTTGCGGCTTATATTTACAAGAAGGCAGGTCGGTGGAAGCAGTCCATTGCCTTGTCAAAGAAGGACAACCTTTACAAAGATGCCATGGAGACAGCCTCACAATCTGGTGATCGTGAACTTGCTGAGGAGTTGCTTGTATATTTCATTGAACAGGGAAAGAAGGAATGCTTTGCCTCATGCCTCTTTGTTTGTTACGATTTGATCCGGGCAGACATAGCTCTTGAACTTGCTTGGATGAACAATATGATTGATTTTGCCTTCCCATACCTCTTACAGTTCATACGTGAGTACACTGGTAAAGTTGATGAACTGGTGAAGGACAAAATTGAAGCACTAAATGAAGTGAAGGCTAAAGAGAAGGAGGAAAAGGATGTAATCGCACAACAGAACATGTATGCTCAGTTGTTACCTCTTGCGTTGCCAGCACCGCCAATGCCAGGAATGGGGGGAGGTCCAGGTATGGGAGGAGGTTTTGCTCCTCCCCCTCCCCCTCCATCTATGGGCGGAATGGGGATGCCTCCAATGCCACCTTTCGGCATGCCACCCATGGGCAGCAACTACTGA 5133 0.4274 MAAANAPIAMREALTLPSVGINPQFITFTHVTMESDKYICVRETSPQNSVVIIDMSMPMQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIEMKTKMKSYQMPEQVVFWKWITPKMLGIVTQTSVFHWSIEGDTEPVKMFERTANLTNNQIINYRCDSTEKWLVLIGIAPGSPEKPQLVKGNMQLFSVDQQRSQALEAHAAAFAQFKVPGNENPSVLISFATKTFNAGQLLSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKFNLIYVITKLGLLFVYDLETAAAVYRNRISPDPIFLTSEASSVGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVNLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPETVAKFQSVPVQAGQTPPLLQYFGTLLTKGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERGEFDKILIYCKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYIRALQHYSELPDIKRVIVNTHAIEPQALVEFFGTLSQEWALECMKDLLTVNLRGNLQIIVQVAKEYCEQMGIDSCIKLFEQFRSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTSNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMEPDLWEKVLNPDNEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIHSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDGNVYHDLVKYLLMVRQKVKEPKVDSELIYAYAKIDRLSEIEEFILMPNVANLQNVGDRLYDEALYEAAKIIFAFISNWAKLAVTLVKLKQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRHEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVIVKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRADIALELAWMNNMIDFAFPYLLQFIREYTGKVDELVKDKIEALNEVKAKEKEEKDVIAQQNMYAQLLPLALPAPPMPGMGGGPGMGGGFAPPPPPPSMGGMGMPPMPPFGMPPMGSNY 1710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1139 1710 SUPERFAMILY ARM repeat 901 1067 IPR016024 -
Lele28g1139 1710 Pfam Clathrin propeller repeat 156 197 IPR022365 -
Lele28g1139 1710 Pfam Clathrin propeller repeat 20 55 IPR022365 -
Lele28g1139 1710 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 700 842 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 Gene3D - 1542 1638 - -
Lele28g1139 1710 FunFam Clathrin heavy chain 1054 1196 - -
Lele28g1139 1710 Gene3D - 1 377 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Lele28g1139 1710 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1142 1283 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 FunFam Clathrin heavy chain 902 1053 - -
Lele28g1139 1710 SUPERFAMILY Clathrin heavy-chain terminal domain 5 343 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Lele28g1139 1710 Coils Coil 1477 1497 - -
Lele28g1139 1710 PANTHER CLATHRIN HEAVY CHAIN RELATED 4 1498 - -
Lele28g1139 1710 SMART CLH_2 1437 1596 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 SMART CLH_2 847 986 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 SMART CLH_2 1142 1283 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 SMART CLH_2 551 693 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 SMART CLH_2 993 1138 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 SMART CLH_2 1288 1434 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 SMART CLH_2 700 842 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 PIRSF CHC 3 1684 IPR016341 GO:0016192|GO:0032051|GO:0071439
Lele28g1139 1710 Pfam Clathrin-H-link 369 434 - -
Lele28g1139 1710 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1288 1434 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 847 986 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 FunFam Clathrin heavy chain 459 787 - -
Lele28g1139 1710 FunFam Clathrin heavy chain 1542 1638 - -
Lele28g1139 1710 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1437 1580 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 SUPERFAMILY ARM repeat 457 793 IPR016024 -
Lele28g1139 1710 SUPERFAMILY ARM repeat 1053 1195 IPR016024 -
Lele28g1139 1710 FunFam Clathrin heavy chain 1 377 - -
Lele28g1139 1710 Coils Coil 1617 1652 - -
Lele28g1139 1710 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 551 697 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 Pfam Clathrin, heavy-chain linker 344 367 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Lele28g1139 1710 SUPERFAMILY ARM repeat 345 500 IPR016024 -
Lele28g1139 1710 SUPERFAMILY ARM repeat 1196 1531 IPR016024 -
Lele28g1139 1710 Pfam Region in Clathrin and VPS 993 1131 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 Pfam Region in Clathrin and VPS 1147 1281 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 Pfam Region in Clathrin and VPS 701 840 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 Pfam Region in Clathrin and VPS 1440 1579 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 Pfam Region in Clathrin and VPS 557 688 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 Pfam Region in Clathrin and VPS 1292 1431 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 Pfam Region in Clathrin and VPS 850 983 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 Gene3D Tetratricopeptide repeat domain 1197 1536 IPR011990 GO:0005515
Lele28g1139 1710 Gene3D Tetratricopeptide repeat domain 457 788 IPR011990 GO:0005515
Lele28g1139 1710 Gene3D Tetratricopeptide repeat domain 901 1056 IPR011990 GO:0005515
Lele28g1139 1710 Gene3D Tetratricopeptide repeat domain 1057 1196 IPR011990 GO:0005515
Lele28g1139 1710 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 993 1138 IPR000547 GO:0006886|GO:0016192
Lele28g1139 1710 FunFam Clathrin heavy chain 1197 1536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1139 Lele-ChrLele28 7370446 7381881 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1147 25 7390741 7402155 Lele28g1139 28 7370446 7381881 CCT
Lele26g1134 26 7300082 7301426 Lele28g1139 28 7370446 7381881 CCT
Lele27g0945 27 17354056 17355802 Lele28g1139 28 7370446 7381881 CCT
Lele28g1139 28 7370446 7381881 Lele27g0923 27 17162913 17167247 CCT
Lele27g0933 27 17266674 17278140 Lele28g1139 28 7370446 7381881 ECH
Lele28g1139 28 7370446 7381881 Lele28g1139 28 7370446 7381881 ECH
Lele25g1147 25 7390741 7402155 Lele28g1139 28 7370446 7381881 hybridization
Lele26g1147 26 7372915 7384377 Lele28g1139 28 7370446 7381881 hybridization