Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1135 ATGACAATCCAGCAAGATGCTCAGGTGTTCAATTGGCACTATACAGAGCTGGATAACCATAACCTCGAAGTTCGGAGCAGAAAAGTGTTGTTCATCATCTTTCTTTTCTGTTTGATTCTTCTAATGATTCTTCTCTTCCTCTGCGCTCGATGGATCTGCCGGTACCGTGACCGCCTTCCGACTACTTTCCACTCCAGTCAGGTGCGTCACACGGCATCTCCACCGTCGCAAGGTCTACACCTTGATTCGATCAAGAAATTGCCGATAATCTTGCACCAGGCGTCGTCGGACTCCGATTGCGCATTGGAGGAAACAGAGTGCTGTATTTGCCTCAGCGTGTTCGAAGATGGCGAGAAGTTGAAGGTGTTGCCCGGATGCAAGCATTGTTTCCACTGTCAGTGTGTCGATAACTGGCTTATTAATCACTCCAGTTGCCCACTCTGCAGAGCTTCCATCAAAGTTGACGTTGATTCTTCGTTTCCAGAGATTTTGATTCAGGAACCACCAATTAGAATCGACCTTCAATTCTAG 531 0.4727 MTIQQDAQVFNWHYTELDNHNLEVRSRKVLFIIFLFCLILLMILLFLCARWICRYRDRLPTTFHSSQVRHTASPPSQGLHLDSIKKLPIILHQASSDSDCALEETECCICLSVFEDGEKLKVLPGCKHCFHCQCVDNWLINHSSCPLCRASIKVDVDSSFPEILIQEPPIRIDLQF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1135 176 SUPERFAMILY RING/U-box 99 155 - -
Lele28g1135 176 SMART ring_2 107 148 IPR001841 -
Lele28g1135 176 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 159 - -
Lele28g1135 176 Pfam Ring finger domain 106 149 IPR001841 -
Lele28g1135 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 155 IPR013083 -
Lele28g1135 176 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1135 Lele-ChrLele28 7354623 7355153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1135 5 158 C3H Transcription Factor Family AT3G11110 38.961 2.51e-31 109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1142 25 7369286 7369816 Lele28g1135 28 7354623 7355153 CCT
Lele25g1133 25 7300965 7302788 Lele28g1135 28 7354623 7355153 CCT
Lele25g1142 25 7369286 7369816 Lele28g1135 28 7354623 7355153 hybridization