Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1127 ATGAAAAGTAGTTGGAATTTCAGTTGGTACAGGGATCACCGGGGACTTCTCTTCTTTTTGGTCGTGTGGTTGCTCTTTCAGAGCTTGTTGGGTATGTGCTTCTCTCTAAATGACGAAGGTAAAGCGCTCTTGAAGTTGAGGCAGAGGATATTGAGTGACCCCTTTGGTGCTTTGTCAAATTGGATTAATGAAGGAGAAGTTGACCCGTGCAGTTGGTTCCGAGTTCAGTGCGTAGATGGAAGAGTGGTGGTCTTGAATTTGAAAGATCTTTGCCTTGGAGGAACTCTGCCACCTGAGCTTGCGAACCTTGTTCATATTAAGTCCATAATTCTGCGAAACAATTCTTTCTATGGGATCATCCCAGAAGAAATTGCCGAACTGAAAGAGTTGGAGGTTTTGGATTTGGGATACAACAACTTCAGTGGATCTGTACCAGCAGATCTTGGGAGTAATATCTCTCTAGCCATCCTTTTGCTGGACAACAATGAGCTTCTTGGTGGGTTCTCTCCCGAAATTAATGAACTGAAGATGCTTTCTGAAAGTCAAGTGGATGAAAACCAGCTTACTCATGCAACTAAAATGCCATCTTGTGCAAGCAGATTCATTCCACAGAATGTTGGCCAAGACACTGTGGTTATGCGAAGGCTACTGCAAACTAGAATTGGACGCCCTTCAAATCTTGAAGTAAATTCCCCCGGCCCCAGCCCCGCCCCCGCCCCCGCCCCCGCTCCCGCTGCATCGCCATCAACTTCCCGATCCCCTTTAGCAGCACCACCTGTAACACCAAATAACACTTCTGCTGATAGAAATACTTCTGCATCTCCTTCTCAAAAATTACCCGAAGCAAGATCTAAAAGTACCTCAAAAAAACATCATGTTGCAATTTTGGTTGGAGGTATAGGTGGTGCTGTATTTATTATCTTAATTGCCAGCATATACGTCTGCAGAACCAACAAAGTTACTACTGTCAAACCTTGGGTAACAGGACTGAGTGGACAGCTTCAGAAGGCATTTGTAACAGGTGTGCCAAAGTTGAAAAGGTCCGAGCTCGTAGCAGCATGTGAAGATTTTAGCAATGTAATTGGCACCTCACCAATCGGAACAGTGTACAAAGGGACTTTATCTAACGGAGTTGAAATTGCTGTAGCATCTGTTACCGTGAAATCACTGAGTGCTTGGTCAAAGACTTTAGAAGTACAGTTCAGGAAAAAGATTGATATGTTATCAAAAGTGAATCACAAGAATTTTGTCAATCTACTTGGATATTGTGAGGAAGAGGAGCCTTTCACCAGAATGATGGTTTTTGAATATGCACCCAATGGAACACTCTTTGAGCATTTACACATAAAAGAAGCTGAACACTTGGATTGGATAACAAGACTTAGAATTGCAATGGGCATGGCATACTGCCTGCAATACATGCATCAGCTAGACCCTCCTGTAGCCCTTAGCAACATGAACTCTTCCTCCATCTTTCTCACCGAGGACTATGCCGTGAAAATTTCAGATTTGAGTTTCTCGTATGAAATAGCTTCATCTGAGATGAAGACCAAGGGCAGTAAACACTTTGATAATCCATTAGCAAGTCCGCAAAGCAACGTTTATGACTTTGGTGTTATACTATTCGAAATGGTAACATCTAGAGTCCCTTATTCAGTTGATAATGGCTCACTTGAAAACTGGGCATCAGATTATTTACAAGGAGACTGCCGTCCCTTGGGAGAAATGGTGGATCCAACTCTAGCCTCTTTCGACAAAGAGAAGCTAGAACAAGTTGCTGAATTGATCAAATCTTGTGGTCATTCTGATCCAAAGCAAAGACCAAGTATGAAGGATGTTAGTATGAGGCTGAGAGAAATAACAAACATGACACCTGAAGCAGCAGTGCCAAGACTTTCTCCACTTTGGTGGGCAGAGCTTGAGATTTTTTCAGCAGATGGCAGCTAA 1947 0.4309 MKSSWNFSWYRDHRGLLFFLVVWLLFQSLLGMCFSLNDEGKALLKLRQRILSDPFGALSNWINEGEVDPCSWFRVQCVDGRVVVLNLKDLCLGGTLPPELANLVHIKSIILRNNSFYGIIPEEIAELKELEVLDLGYNNFSGSVPADLGSNISLAILLLDNNELLGGFSPEINELKMLSESQVDENQLTHATKMPSCASRFIPQNVGQDTVVMRRLLQTRIGRPSNLEVNSPGPSPAPAPAPAPAASPSTSRSPLAAPPVTPNNTSADRNTSASPSQKLPEARSKSTSKKHHVAILVGGIGGAVFIILIASIYVCRTNKVTTVKPWVTGLSGQLQKAFVTGVPKLKRSELVAACEDFSNVIGTSPIGTVYKGTLSNGVEIAVASVTVKSLSAWSKTLEVQFRKKIDMLSKVNHKNFVNLLGYCEEEEPFTRMMVFEYAPNGTLFEHLHIKEAEHLDWITRLRIAMGMAYCLQYMHQLDPPVALSNMNSSSIFLTEDYAVKISDLSFSYEIASSEMKTKGSKHFDNPLASPQSNVYDFGVILFEMVTSRVPYSVDNGSLENWASDYLQGDCRPLGEMVDPTLASFDKEKLEQVAELIKSCGHSDPKQRPSMKDVSMRLREITNMTPEAAVPRLSPLWWAELEIFSADGS 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1127 648 SUPERFAMILY L domain-like 38 191 - -
Lele28g1127 648 Gene3D Ribonuclease Inhibitor 35 210 IPR032675 -
Lele28g1127 648 ProSiteProfiles Protein kinase domain profile. 355 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele28g1127 648 Gene3D Phosphorylase Kinase; domain 1 328 437 - -
Lele28g1127 648 Gene3D Transferase(Phosphotransferase) domain 1 438 629 - -
Lele28g1127 648 MobiDBLite consensus disorder prediction 231 247 - -
Lele28g1127 648 FunFam Inactive receptor-like serine/threonine-protein kinase 329 437 - -
Lele28g1127 648 MobiDBLite consensus disorder prediction 248 282 - -
Lele28g1127 648 Pfam Protein tyrosine and serine/threonine kinase 358 616 IPR001245 GO:0004672|GO:0006468
Lele28g1127 648 Pfam Leucine rich repeat N-terminal domain 37 77 IPR013210 -
Lele28g1127 648 MobiDBLite consensus disorder prediction 222 287 - -
Lele28g1127 648 SUPERFAMILY Protein kinase-like (PK-like) 349 637 IPR011009 -
Lele28g1127 648 PANTHER PROTEIN MALE DISCOVERER 2 18 645 - -
Lele28g1127 648 FunFam Nuclear pore complex protein NUP107 36 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1127 Lele-ChrLele28 7298668 7302022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1127 18 613 Receptor kinase-like Gene Family AT1G66830 27.286 4.25e-48 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Lele28g1127 PK_Tyr_Ser-Thr 6.4e-27 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1135 25 7312568 7315915 Lele28g1127 28 7298668 7302022 CCT
Lele25g1135 25 7312568 7315915 Lele28g1127 28 7298668 7302022 hybridization
Lele26g1136 26 7311741 7315136 Lele28g1127 28 7298668 7302022 hybridization